T-MIDAS
napari-tmidasTissue Microscopy Image Data Analysis Suite
- Marco Meer
First released:
05 March 2025Last updated:
10 March 2025Installs:
16Plugin type:
Reader, Sample data, Widget, Writer
Workflow step:
Image segmentation
Image annotation
Plugins
Browse plugins: 487
PartSeg
PartSegPartSeg is python GUI and set of napari plugins for bio imaging analysis especially nucleus analysis,
First released:
14 January 2019Last updated:
10 March 2025Installs:
8.1KPlugin type:
Reader, Widget, Writer
brainreg
brainregAutomated multi-atlas whole-brain microscopy registration
First released:
26 May 2020Last updated:
10 March 2025Installs:
12KPlugin type:
Sample data, Widget
BrainGlobe
brainglobe-utilsShared general purpose tools for the BrainGlobe project
First released:
23 June 2023Last updated:
10 March 2025Installs:
30KPlugin type:
Widget
cellfinder
cellfinderAutomated 3D cell detection in large microscopy images
First released:
17 January 2020Last updated:
10 March 2025Installs:
11KPlugin type:
Sample data, Widget
movement
movementAnalysis of body movement
First released:
02 April 2020Last updated:
10 March 2025Installs:
0Plugin type:
Widget
DINOSim Segmentation
napari-dinosimA simple plugin to use DinoSim in napari
- Aitor Gonzalez-Marfil
First released:
05 March 2025Last updated:
09 March 2025Installs:
73Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
single-cell segmentation
napari-biopbPerforming image analysis by visiting biopb endpoints
- Ji Yu
First released:
02 February 2025Last updated:
07 March 2025Installs:
32Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
AxonDeepSeg
AxonDeepSegAxon/Myelin segmentation using AI
First released:
09 December 2017Last updated:
06 March 2025Installs:
2KPlugin type:
Widget
Workflow step:
Image segmentation
Image annotation
EpiCure
epicureNapari plugin to manually correct epithelia segmentation in movies
- Gaëlle Letort
First released:
18 October 2024Last updated:
06 March 2025Installs:
120Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
napari OMAAS
napari-omaasnapari-OMAAS stands for Optical Mapping Acquisition and Analysis Software
- Ruben Lopez
First released:
09 August 2022Last updated:
06 March 2025Installs:
219Plugin type:
Reader, Sample data, Widget, Writer
psf-analysis-CFIM
psf-analysis-CFIMA continuation of napari_psf_analysis, developed for CFIM - KU
- Markus L. Bille
First released:
11 February 2025Last updated:
05 March 2025Installs:
77Plugin type:
Reader, Widget
Lattice Lightsheet Analysis
napari-latticeNapari plugin for analysing and visualizing lattice lightsheet and Oblique Plane Microscopy data.
- Pradeep Rajasekhar
- Lachlan Whitehead
- Robert Haase
- Michael Milton
First released:
19 July 2022Last updated:
05 March 2025Installs:
587Plugin type:
Reader, Widget
PSSR2
pssrPoint-Scanning Super-Resolution 2
- Hayden Stites
First released:
17 April 2024Last updated:
04 March 2025Installs:
335Plugin type:
Widget
Filter labels by properties
napari-filter-labels-by-propA simple plugin to filter labels by properites.
- Loïc Sauteur
First released:
24 January 2025Last updated:
04 March 2025Installs:
77Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation