The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

Plugins

Browse plugins: 487

T-MIDAS

napari-tmidas

Tissue Microscopy Image Data Analysis Suite

  • Marco Meer
  • First released:

    05 March 2025
  • Last updated:

    10 March 2025
  • Installs:

    16
  • Plugin type:

    Reader, Sample data, Widget, Writer
Workflow step:
Image segmentation
Image annotation

PartSeg

PartSeg

PartSeg is python GUI and set of napari plugins for bio imaging analysis especially nucleus analysis,

    • First released:

      14 January 2019
    • Last updated:

      10 March 2025
    • Installs:

      8.1K
    • Plugin type:

      Reader, Widget, Writer

    brainreg

    brainreg

    Automated multi-atlas whole-brain microscopy registration

      • First released:

        26 May 2020
      • Last updated:

        10 March 2025
      • Installs:

        12K
      • Plugin type:

        Sample data, Widget

      BrainGlobe

      brainglobe-utils

      Shared general purpose tools for the BrainGlobe project

        • First released:

          23 June 2023
        • Last updated:

          10 March 2025
        • Installs:

          30K
        • Plugin type:

          Widget

        cellfinder

        cellfinder

        Automated 3D cell detection in large microscopy images

          • First released:

            17 January 2020
          • Last updated:

            10 March 2025
          • Installs:

            11K
          • Plugin type:

            Sample data, Widget

          movement

          movement

          Analysis of body movement

            • First released:

              02 April 2020
            • Last updated:

              10 March 2025
            • Installs:

              0
            • Plugin type:

              Widget

            DINOSim Segmentation

            napari-dinosim

            A simple plugin to use DinoSim in napari

            • Aitor Gonzalez-Marfil
            • First released:

              05 March 2025
            • Last updated:

              09 March 2025
            • Installs:

              73
            • Plugin type:

              Widget
            Workflow step:
            Image segmentation
            Image annotation

            single-cell segmentation

            napari-biopb

            Performing image analysis by visiting biopb endpoints

            • Ji Yu
            • First released:

              02 February 2025
            • Last updated:

              07 March 2025
            • Installs:

              32
            • Plugin type:

              Widget
            Workflow step:
            Image annotation
            Image segmentation

            AxonDeepSeg

            AxonDeepSeg

            Axon/Myelin segmentation using AI

              • First released:

                09 December 2017
              • Last updated:

                06 March 2025
              • Installs:

                2K
              • Plugin type:

                Widget
              Workflow step:
              Image segmentation
              Image annotation

              EpiCure

              epicure

              Napari plugin to manually correct epithelia segmentation in movies

              • Gaëlle Letort
              • First released:

                18 October 2024
              • Last updated:

                06 March 2025
              • Installs:

                120
              • Plugin type:

                Widget
              Workflow step:
              Image segmentation
              Image annotation

              napari OMAAS

              napari-omaas

              napari-OMAAS stands for Optical Mapping Acquisition and Analysis Software

              • Ruben Lopez
              • First released:

                09 August 2022
              • Last updated:

                06 March 2025
              • Installs:

                219
              • Plugin type:

                Reader, Sample data, Widget, Writer

              psf-analysis-CFIM

              psf-analysis-CFIM

              A continuation of napari_psf_analysis, developed for CFIM - KU

              • Markus L. Bille
              • First released:

                11 February 2025
              • Last updated:

                05 March 2025
              • Installs:

                77
              • Plugin type:

                Reader, Widget

              Lattice Lightsheet Analysis

              napari-lattice

              Napari plugin for analysing and visualizing lattice lightsheet and Oblique Plane Microscopy data.

              • Pradeep Rajasekhar
              • Lachlan Whitehead
              • Robert Haase
              • Michael Milton
              • First released:

                19 July 2022
              • Last updated:

                05 March 2025
              • Installs:

                587
              • Plugin type:

                Reader, Widget

              PSSR2

              pssr

              Point-Scanning Super-Resolution 2

              • Hayden Stites
              • First released:

                17 April 2024
              • Last updated:

                04 March 2025
              • Installs:

                335
              • Plugin type:

                Widget

              Filter labels by properties

              napari-filter-labels-by-prop

              A simple plugin to filter labels by properites.

              • Loïc Sauteur
              • First released:

                24 January 2025
              • Last updated:

                04 March 2025
              • Installs:

                77
              • Plugin type:

                Widget
              Workflow step:
              Image annotation
              Image segmentation