The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

BrainGlobe

brainglobe-utils

Shared general purpose tools for the BrainGlobe project

    Shared general purpose tools for the BrainGlobe project, including citation generation.

    Installation

    pip install brainglobe-utils

    To also include the dependencies required for Qt widgets, use:

    pip install brainglobe-utils[qt]

    For development, clone this repository and install the dependencies with:

    pip install -e .[dev]

    Seeking help or contributing

    We are always happy to help users of our tools, and welcome any contributions. If you would like to get in contact with us for any reason, please see the contact page of our website.

    Citations for BrainGlobe tools

    brainglobe-utils comes with the cite-brainglobe command line tool, to write citations for BrainGlobe tools for you so you don't need to worry about fetching the data yourself. You can read about how to use the tool on the documentation website.

    Version:

    • 0.6.3

    Last updated:

    • 28 November 2024

    First released:

    • 23 June 2023

    License:

    Supported data:

    • Information not submitted

    Plugin type:

    GitHub activity:

    • Stars: 11
    • Forks: 1
    • Issues + PRs: 7

    Python versions supported:

    Operating system:

    Requirements:

    • brainglobe-atlasapi>=2.0.1
    • brainglobe-space
    • configobj
    • natsort
    • nibabel>=2.1.0
    • numba
    • numpy
    • dask
    • pandas
    • psutil
    • pyarrow
    • PyYAML
    • scikit-image
    • scipy
    • slurmio
    • tifffile
    • tqdm