The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

single-cell segmentation

napari-biopb

Performing single-cell segmentation by visiting biopb endpoints

Workflow step:
Image annotation
Image segmentation

License MIT PyPI Python Version tests codecov napari hub

Performing single-cell segmentation by visiting biopb endpoints

Installation

You can install napari-biopb via pip:

pip install napari-biopb

To install latest development version :

pip install git+https://github.com/jiyuuchc/napari-biopb.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-biopb" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.1.0

Last updated:

  • 02 February 2025

First released:

  • 02 February 2025

License:

Supported data:

  • Information not submitted

Plugin type:

GitHub activity:

  • Stars: 1
  • Forks: 0
  • Issues + PRs: 0

Python versions supported:

Operating system:

Requirements:

  • numpy
  • magicgui
  • qtpy
  • scikit-image
  • biopb
  • opencv-python-headless
  • grpcio_tools
  • vedo