BioPB
Performing image analysis by visiting biopb endpoints
Installation
Bundled Installers
Pre-built standalone installers are available from the Releases page. These include napari with the napari-biopb plugin pre-installed—no Python setup required.
| Platform | Download |
|---|---|
| Windows | napari-biopb-windows.zip |
| macOS (Intel) | napari-biopb-macos-intel.tar.gz |
| macOS (Apple Silicon) | napari-biopb-macos-arm.tar.gz |
| Linux | napari-biopb-linux.tar.gz |
Usage:
- Windows: Extract the zip and run
napari-biopb.exe - macOS: Extract and open
napari-biopb.app(right-click → "Open" to bypass Gatekeeper for unsigned apps) - Linux: Extract and run
./napari-biopb
From PyPI
For users with existing virtual environement setup for napari: install napari-biopb via pip:
pip install napari-biopb
Development Version
To install latest development version:
pip install git+https://github.com/jiyuuchc/napari-biopb.git
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the MIT license, "napari-biopb" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
Version:
- 0.4.1
Last updated:
- 2026-05-28
First released:
- 2025-02-02
License:
- MIT
Operating system:
- Information not submitted
Requirements:
- numpy
- pandas
- magicgui
- qtpy
- scikit-image
- biopb[tensor]>=0.5.4
- opencv-python-headless
- grpcio_tools
- grpcio-health-checking
- platformdirs
- tox; extra == "testing"
- pytest; extra == "testing"
- pytest-cov; extra == "testing"
- pytest-qt; extra == "testing"
- pytest-env; extra == "testing"
- napari; extra == "testing"
- pyqt6; extra == "testing"
- mcp>=1.20; extra == "testing"
- jupyter_client; extra == "testing"
- ipykernel; extra == "testing"
- napari-skimage-regionprops; extra == "tables"
- mcp>=1.20; extra == "mcp"
- uvicorn>=0.29; extra == "mcp"
- jupyter_client; extra == "mcp"
- ipykernel; extra == "mcp"
- vedo; extra == "3d"