cellfinder
cellfinderAutomated 3D cell detection in large microscopy images
First released:
17 January 2020Last updated:
21 January 2025Installs:
10KPlugin type:
Sample data, Widget
Plugins
Browse plugins: 499
Leonardo-DeStripe
lsfm-destripe-napariA simple plugin to destripe microscopy images
- Lennart Kowitz
First released:
12 December 2024Last updated:
21 January 2025Installs:
19Plugin type:
Reader, Widget, Writer
Workflow step:
Visualization
napari spatialdata
napari-spatialdataInteractive visualization of spatial omics data with napari
- giovanni palla
First released:
06 July 2022Last updated:
20 January 2025Installs:
9.4KPlugin type:
Reader, Widget
eHooke
napari-ehookeeHooke implementation within napari
- António Brito
First released:
02 March 2023Last updated:
20 January 2025Installs:
331Plugin type:
Sample data, Widget
BigFISH smFISH Analysis
napari-bigfishA napari-plugin providing an alternative GUI for Big-FISH. Big-FISH is a python package for the analysis of smFISH images.
- Volker Baecker
First released:
07 April 2023Last updated:
16 January 2025Installs:
375Plugin type:
Sample data, Widget
MouseCHD
mousechd-napariA tool for heart segmentation and congenital heart defect detection in mice.
- Hoa Nguyen
First released:
18 November 2023Last updated:
16 January 2025Installs:
212Plugin type:
Reader, Sample data, Widget
Embryo Segmentation
segment-embryo3D Segment ascidian embryos using cellpose. The images are first rescaled to be isotropic and then downscaled, before cellpose is used. The resulting labels are upscaled to match the original data.
- Volker Baecker
First released:
27 November 2024Last updated:
15 January 2025Installs:
45Plugin type:
Sample data, Widget
Workflow step:
Image annotation
Image segmentation
Napari Phasors
napari-phasorsA simple plugin to use phasor analysis
- Bruno Pannunzio
- Marcelo L. Zoccoler
- Bruno Schuty
- Leonel Malacrida
First released:
22 November 2024Last updated:
14 January 2025Installs:
83Plugin type:
Reader, Sample data, Widget, Writer
Workflow step:
Image annotation
Image segmentation
napari-spotiflow
napari-spotiflowNapari plugin for Spotiflow
- Albert Dominguez Mantes
- Martin Weigert
First released:
02 February 2024Last updated:
14 January 2025Installs:
415Plugin type:
Reader, Sample data, Widget
Feature Forest
featureforestA napari plugin for segmentation using vision transformer features
First released:
10 October 2024Last updated:
14 January 2025Installs:
91Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
napari SVG
napari-svgA plugin for writing svg files with napari
First released:
13 April 2020Last updated:
14 January 2025Installs:
1.1MPlugin type:
Writer
Save multidimensional file as folder of tifs
napari-file2folderSave multidimensional file as folder of tifs
- Jules Vanaret
First released:
28 October 2024Last updated:
12 January 2025Installs:
47Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
Lasso
lasso-3d3D lasso tool to select large 3D areas
- Lorenz Lamm
First released:
09 January 2025Last updated:
09 January 2025Installs:
16Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
Tapenade Processing
napari-tapenade-processingA visual pipeline to process images with Tapenade in Napari
- Jules Vanaret
First released:
13 August 2024Last updated:
09 January 2025Installs:
162Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
nDev
napari-ndevnapari widgets to (batch) process images from start to finish.
First released:
31 January 2023Last updated:
08 January 2025Installs:
949Plugin type:
Reader, Widget