dmc_brainmap

DMC-BrainMap is an end-to-end tool for multi-feature brain mapping across species.
This napari plugin was generated with Cookiecutter using napari's cookiecutter-napari-plugin template.

Documentation¶

Documentation on DMC-BrainMap's source code can be found on the project's Read the Docs page.

Installation¶

DMC-BrainMap is a plugin for napari. To install napari, we recommend to install napari into a clean virtual environment using conda or venv. Please refer to the napari installation guide for more information.

Step 1: Setup the virtual environment (Python 3.10)¶

conda create -y -n napari-env -c conda-forge python=3.10
conda activate napari-env

Step 2: Install napari¶

python -m pip install "napari[all]"

Step 3: Install napari-dmc-brainmap¶

You can install napari-dmc-brainmap via the napari plugin manager or via pip:

pip install napari-dmc-brainmap

Usage¶

Please refer to the user-guide/DMC-BrainMap-User-Guide.pdf for detailed instructions on how to use DMC-BrainMap.

Seeking help or contributing¶

DMC-BrainMap is an open-source project, and we welcome contributions of all kinds. If you have any questions, feedback, or suggestions, please feel free to open an issue on this repository.

License¶

Distributed under the terms of the BSD-3 license, "napari-dmc-brainmap" is free and open source software

Citing DMC-BrainMap¶

TBA