brainrender
A napari plugin to render BrainGlobe atlases and associated data as layers.
Visualisation and management of BrainGlobe atlases in napari.
A napari plugin to visualise and manage BrainGlobe atlases. brainrender-napari aims to port the functionality of brainrender to napari.
Usage
Check out the "Visualising an atlas in napari" tutorial in the BrainGlobe documentation.
Installation
We strongly recommend to use a virtual environment manager (like conda or venv). The installation instructions below will not specify the Qt backend for napari, and you will therefore need to install that separately. Please see the napari installation instructions for further advice on this.
You can install brainrender-napari via pip:
pip install brainrender-napari
To install latest development version :
pip install git+https://github.com/brainglobe/brainrender-napari.git
Seeking help or contributing
We are always happy to help users of our tools, and welcome any contributions. If you would like to get in contact with us for any reason, please see the contact page of our website.
License
Distributed under the terms of the BSD-3 license, "brainrender-napari" is free and open source software
Acknowledgements
This @napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template and the Neuroinformatics Unit's template.
Version:
- 0.1.3
Last updated:
- 2025-08-27
First released:
- 2023-10-13
License:
- BSD-3-Clause
Python versions supported:
Operating system:
- Information not submitted
Requirements:
- brainglobe-atlasapi>=2.2.0
- brainglobe-utils>=0.4.3
- meshio
- napari>=0.6.1
- numpy
- qtpy
- pytest; extra == "dev"
- pytest-cov; extra == "dev"
- pytest-mock; extra == "dev"
- pytest-qt; extra == "dev"
- coverage; extra == "dev"
- tox; extra == "dev"
- black; extra == "dev"
- mypy; extra == "dev"
- pre-commit; extra == "dev"
- ruff; extra == "dev"
- setuptools_scm; extra == "dev"
- pyqt5; extra == "dev"