napari-spatialdata
napari-spatialdataInteractive visualization of spatial omics data with napari
- giovanni palla
First released:
06 July 2022Last updated:
26 November 2024Installs:
7.7KPlugin type:
information not submitted
Plugins
Browse plugins: 473
CellPose Counter
cellpose-counterCell/nuclei counter using cellpose models
- Nicolas Buitrago
First released:
21 November 2024Last updated:
26 November 2024Installs:
43Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
napari-bbox-spfluo
napari-bbox-spfluoA new layer for bounding boxes in 2+ dimensions. Fork of napari-bbox for spfluo-app needs.
First released:
04 October 2024Last updated:
26 November 2024Installs:
179Plugin type:
information not submitted
VASCilia
Napari-VASCiliaVASCilia (Vision Analysis StereoCilia): A Napari Plugin for Deep Learning-Based 3D Analysis of Cochlear Hair Cell Stereocilia Bundles
- Yasmin Kassim
First released:
28 June 2024Last updated:
25 November 2024Installs:
74Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
Visualization
CryoET Data Portal
napari-cryoet-data-portalList, preview, and open data from the CZII CryoET Data Portal
- Andy Sweet
First released:
14 August 2023Last updated:
25 November 2024Installs:
432Plugin type:
Reader, Sample data, Widget
CellSeg3D
napari-cellseg3dPlugin for cell segmentation in 3D
First released:
25 June 2022Last updated:
25 November 2024Installs:
1.2KPlugin type:
Widget
skan
skanSkeleton analysis in Python
First released:
08 November 2016Last updated:
23 November 2024Installs:
66KPlugin type:
Widget
Napari Phasors
napari-phasorsA simple plugin to use phasor analysis
- Bruno Pannunzio
- Marcelo L. Zoccoler
- Bruno Schuty
First released:
22 November 2024Last updated:
22 November 2024Installs:
13Plugin type:
Reader, Sample data, Widget, Writer
Workflow step:
Image segmentation
Image annotation
Tapenade Processing
napari-tapenade-processingA visual pipeline to process images with Tapenade in Napari
- Jules Vanaret
First released:
13 August 2024Last updated:
22 November 2024Installs:
90Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
Cryo-FIB/SEM Image Stacks Post-Processing
napari-cryofibsem-imgprocA napari plugin for artifact removal, noise reduction, contrast enhancement and stack brightness correction of Cryo-FIB/SEM image stacks.
- Shaina V. To
First released:
20 September 2024Last updated:
19 November 2024Installs:
47Plugin type:
Sample data, Widget
napatrackmater
napatrackmaterImport Trackmate XML files for Track Visualization and analysis in Napari.
- Varun Kapoor
- Mari Tolonen
- Jakub Sedzinski
First released:
16 January 2021Last updated:
19 November 2024Installs:
6.7KPlugin type:
information not submitted
Lattice Lightsheet Analysis
napari-latticeNapari plugin for analysing and visualizing lattice lightsheet and Oblique Plane Microscopy data.
- Pradeep Rajasekhar
- Lachlan Whitehead
- Robert Haase
- Michael Milton
First released:
19 July 2022Last updated:
19 November 2024Installs:
510Plugin type:
Reader, Widget
lls-core
lls-coreCore functionality for analysing and visualizing lattice lightsheet and Oblique Plane Microscopy data.
- Pradeep Rajasekhar
- Lachlan Whitehead
- Robert Haase
- Michael Milton
First released:
19 November 2024Last updated:
19 November 2024Installs:
14Plugin type:
information not submitted
napari-nifti
napari-niftiA napari plugin for reading and writing NIFTI files that have the extension .nii or .nii.gz.
- Karol Gotkowski
First released:
18 April 2023Last updated:
18 November 2024Installs:
2.7KPlugin type:
Reader, Writer
napari prism
napari-prismA Python package for the inteRactive and Integrated analySis of Multiplexed tissue microarrays
- Rafael Tubelleza
First released:
14 November 2024Last updated:
16 November 2024Installs:
44Plugin type:
Reader, Widget