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Marcelo L. Zoccoler

Cornelia Wetzker

# napari-flim-phasor-plotter

[![License BSD-3](https://img.shields.io/pypi/l/napari-flim-phasor-plotter.svg?color=green)](https://github.com/zoccoler/napari-flim-phasor-plotter/raw/main/LICENSE)
[![PyPI](https://img.shields.io/pypi/v/napari-flim-phasor-plotter.svg?color=green)](https://pypi.org/project/napari-flim-phasor-plotter)
[![Python Version](https://img.shields.io/pypi/pyversions/napari-flim-phasor-plotter.svg?color=green)](https://python.org)
[![tests](https://github.com/zoccoler/napari-flim-phasor-plotter/workflows/tests/badge.svg)](https://github.com/zoccoler/napari-flim-phasor-plotter/actions)
[![codecov](https://codecov.io/gh/zoccoler/napari-flim-phasor-plotter/branch/main/graph/badge.svg)](https://codecov.io/gh/zoccoler/napari-flim-phasor-plotter)
[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-flim-phasor-plotter)](https://napari-hub.org/plugins/napari-flim-phasor-plotter)
[![DOI](https://zenodo.org/badge/578127094.svg)](https://zenodo.org/doi/10.5281/zenodo.12620955)

Napari-flim-phasor-plotter is a [napari](https://napari.org/stable/) plugin to interactively load and show raw fluorescence lifetime imaging microscopy (FLIM) single images and series and generate phasor plots. These are Fourier transforms of the decay data being visualized using the [napari-clusters-plotter](https://github.com/BiAPoL/napari-clusters-plotter) plotter, adapted to suit the FLIM context. This allows qualitative and quantitative downstream analysis of FLIM images.  

----------------------------------

## Quick demo

![](https://github.com/zoccoler/napari-flim-phasor-plotter/raw/main/images/napari_FLIM_phasor_calculator_Demo.gif)

## Documentation

Please check our [documentation](https://napari-flim-phasor-plotter.readthedocs.io/en/latest/) for more details on how to install and use this plugin.

## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure
the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [BSD-3] license,
"napari-flim-phasor-plotter" is free and open source software. 

If you use this plugin in a publication, please cite us: https://doi.org/10.5281/zenodo.12620956

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin

[file an issue]: https://github.com/zoccoler/napari-flim-phasor-plotter/issues

[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/


napari-flim-phasor-plotter







Napari-flim-phasor-plotter is a napari plugin to interactively load and show raw fluorescence lifetime imaging microscopy (FLIM) single images and series and generate phasor plots. These are Fourier transforms of the decay data being visualized using the napari-clusters-plotter plotter, adapted to suit the FLIM context. This allows qualitative and quantitative downstream analysis of FLIM images.  

Quick demo

Documentation
Please check our documentation for more details on how to install and use this plugin.
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure
the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the BSD-3 license,
"napari-flim-phasor-plotter" is free and open source software. 
If you use this plugin in a publication, please cite us: https://doi.org/10.5281/zenodo.12620956
Issues
If you encounter any problems, please file an issue along with a detailed description.

napari-flim-phasor-plotter

A plugin that performs phasor plot from TCSPC FLIM data.

FLIM phasor plotter

A plugin that performs phasor plot from TCSPC FLIM data.

Quick demo¶

Documentation¶

Contributing¶

License¶

Issues¶