napari spatialdata
napari-spatialdataInteractive visualization of spatial omics data with napari
- giovanni palla
First released:
06 July 2022Last updated:
21 April 2025Installs:
13KPlugin type:
Reader, Widget
Plugins
Browse plugins: 502
Frontveg
frontvegSegmentation of vegetation located to close to camera
- Herearii Metuarea
First released:
20 April 2025Last updated:
20 April 2025Installs:
0Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
PSSR2
pssrPoint-Scanning Super-Resolution 2
- Hayden Stites
First released:
17 April 2024Last updated:
17 April 2025Installs:
359Plugin type:
Widget
SAM2Long
napari-sam2longA plugin for interactive 3D (volumetric or time-lapse) segmentation using Meta's Segment Anything Model 2 (SAM2).
- Mai Hoang
First released:
14 April 2025Last updated:
17 April 2025Installs:
41Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
napari prism
napari-prismA Python package for the inteRactive and Integrated analySis of Multiplexed tissue microarrays
- Rafael Tubelleza
First released:
14 November 2024Last updated:
16 April 2025Installs:
180Plugin type:
Reader, Widget
PSF Generator
napari-psfgeneratorPlugin to compute the focal electric field
First released:
05 February 2025Last updated:
16 April 2025Installs:
38Plugin type:
Reader, Sample data, Widget, Writer
samcell-napari
samcell-napariA napari plugin for cell segmentation with SAMCell 1.0
- Saahil Sanganeriya
First released:
02 April 2025Last updated:
14 April 2025Installs:
59Plugin type:
Sample data, Widget
Easy Augment Batch DL
napari-easy-augment-batch-dlA plugin to perform unet based deep learning with a small number of labels and augmentation
- Brian Northan
First released:
18 August 2024Last updated:
11 April 2025Installs:
109Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
Mask Analyzer
napari-mask-densityA napari plugin for analyzing mask density in regions of interest
- Da Kuang
First released:
11 April 2025Last updated:
11 April 2025Installs:
9Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
psf-analysis-CFIM
psf-analysis-CFIMA continuation of napari_psf_analysis, developed for CFIM - KU
- Markus L. Bille
First released:
11 February 2025Last updated:
11 April 2025Installs:
132Plugin type:
Reader, Widget
Fit Ellipsoid
fitellipsoidA plugin to that fits an ellipsoid to a set of user clicked points in 3D
- Pierre Weiss
First released:
08 April 2025Last updated:
11 April 2025Installs:
35Plugin type:
Widget
MMV-Region Segmentation
mmv-regionsegNapari plugin for the segmentation of regions by flood
First released:
21 March 2025Last updated:
10 April 2025Installs:
29Plugin type:
Widget
Workflow step:
Image segmentation
brainrender
brainrender-napariA napari plugin to render BrainGlobe atlases and associated data as layers.
First released:
13 October 2023Last updated:
10 April 2025Installs:
4.7KPlugin type:
Widget
dmc_brainmap
napari-dmc-brainmapDMC-BrainMap is an end-to-end tool for multi-feature brain mapping across species
- Felix Jung
First released:
18 February 2025Last updated:
10 April 2025Installs:
75Plugin type:
Widget
cylindra
cylindraSpectral analysis, simulation and subtomogram averaging of heterogenic cylindrical structures
- Hanjin Liu
First released:
01 May 2024Last updated:
09 April 2025Installs:
1.5KPlugin type:
Widget