BrainGlobe Registration
brainglobe-registrationA napari plugin for registration to a BrainGlobe atlas.
First released:
27 January 2025Last updated:
27 January 2025Installs:
0Plugin type:
Sample data, Widget
Plugins
Browse plugins: 501
brainrender
brainrender-napariA napari plugin to render BrainGlobe atlases and associated data as layers.
First released:
13 October 2023Last updated:
27 January 2025Installs:
3.8KPlugin type:
Widget
EpiTools
epitoolsQuantifying 2D cell shape and epithelial tissue dynamics
- Yanlan Mao
First released:
04 May 2023Last updated:
27 January 2025Installs:
492Plugin type:
Reader, Sample data, Widget, Writer
Filter labels by properties
napari-filter-labels-by-propA simple plugin to filter labels by properites.
- Loïc Sauteur
First released:
24 January 2025Last updated:
24 January 2025Installs:
15Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
napari ConvPaint
napari-convpaintA plugin for segmentation by pixel classification using pre-trained neural networks for feature extraction
- Guillaume Witz
First released:
01 November 2023Last updated:
24 January 2025Installs:
2.5KPlugin type:
Sample data, Widget
eHooke
napari-ehookeeHooke implementation within napari
- António Brito
First released:
02 March 2023Last updated:
23 January 2025Installs:
357Plugin type:
Sample data, Widget
EpiCure
epicureNapari plugin to manually correct epithelia segmentation in movies
- Gaëlle Letort
First released:
18 October 2024Last updated:
22 January 2025Installs:
65Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
cellfinder
cellfinderAutomated 3D cell detection in large microscopy images
First released:
17 January 2020Last updated:
21 January 2025Installs:
10KPlugin type:
Sample data, Widget
Leonardo-DeStripe
lsfm-destripe-napariA simple plugin to destripe microscopy images
- Lennart Kowitz
First released:
12 December 2024Last updated:
21 January 2025Installs:
43Plugin type:
Reader, Widget, Writer
Workflow step:
Visualization
napari spatialdata
napari-spatialdataInteractive visualization of spatial omics data with napari
- giovanni palla
First released:
06 July 2022Last updated:
20 January 2025Installs:
9.7KPlugin type:
Reader, Widget
BigFISH smFISH Analysis
napari-bigfishA napari-plugin providing an alternative GUI for Big-FISH. Big-FISH is a python package for the analysis of smFISH images.
- Volker Baecker
First released:
07 April 2023Last updated:
16 January 2025Installs:
381Plugin type:
Sample data, Widget
MouseCHD
mousechd-napariA tool for heart segmentation and congenital heart defect detection in mice.
- Hoa Nguyen
First released:
18 November 2023Last updated:
16 January 2025Installs:
214Plugin type:
Reader, Sample data, Widget
Embryo Segmentation
segment-embryo3D Segment ascidian embryos using cellpose. The images are first rescaled to be isotropic and then downscaled, before cellpose is used. The resulting labels are upscaled to match the original data.
- Volker Baecker
First released:
27 November 2024Last updated:
15 January 2025Installs:
53Plugin type:
Sample data, Widget
Workflow step:
Image annotation
Image segmentation
Napari Phasors
napari-phasorsA simple plugin to use phasor analysis
- Bruno Pannunzio
- Marcelo L. Zoccoler
- Bruno Schuty
- Leonel Malacrida
First released:
22 November 2024Last updated:
14 January 2025Installs:
85Plugin type:
Reader, Sample data, Widget, Writer
Workflow step:
Image annotation
Image segmentation
napari-spotiflow
napari-spotiflowNapari plugin for Spotiflow
- Albert Dominguez Mantes
- Martin Weigert
First released:
02 February 2024Last updated:
14 January 2025Installs:
436Plugin type:
Reader, Sample data, Widget