3D Counter
napari-3d-counterA simple plugin for counting objects in 3D images
- Peter Newstein
First released:
18 October 2023Last updated:
21 February 2025Installs:
602Plugin type:
Widget
Plugins
Browse plugins: 482
psf-analysis-CFIM
psf-analysis-CFIMA continuation of napari_psf_analyses, developed for CFIM - KU
- Markus L. Bille
First released:
11 February 2025Last updated:
21 February 2025Installs:
44Plugin type:
Reader, Widget
EpiCure
epicureNapari plugin to manually correct epithelia segmentation in movies
- Gaëlle Letort
First released:
18 October 2024Last updated:
20 February 2025Installs:
100Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
Melt Pool Tracker
napari-melt-pool-trackerPlugin for tracking the width and depth of the melt pool and keyhole in x-ray images of laser powder bed fusion experiments.
- Florian Aymanns
First released:
02 November 2023Last updated:
20 February 2025Installs:
113Plugin type:
Reader, Sample data, Widget, Writer
cell-AAP
cell-AAP- Anish Virdi
First released:
28 May 2024Last updated:
20 February 2025Installs:
218Plugin type:
Widget
nDev
napari-ndevnapari widgets to (batch) process images from start to finish.
First released:
31 January 2023Last updated:
20 February 2025Installs:
1KPlugin type:
Reader, Widget
cellfinder
cellfinderAutomated 3D cell detection in large microscopy images
First released:
17 January 2020Last updated:
19 February 2025Installs:
11KPlugin type:
Sample data, Widget
Motile
motile-trackerApplication for interactive tracking with global optimization
First released:
18 December 2024Last updated:
19 February 2025Installs:
87Plugin type:
Sample data, Widget
Vessel Quality Check
VessQCNapari plugin for checking and correcting the segmentation
- Peter Lampen
First released:
18 February 2025Last updated:
18 February 2025Installs:
20Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
dmc_brainmap
napari-dmc-brainmapImage analysis pipeline for quantification of 2D mouse brain anatomical tracing data
- Felix Jung
First released:
18 February 2025Last updated:
18 February 2025Installs:
21Plugin type:
Widget
napari Sediment
napari-sedimentA plugin to process hyperspectral images of sediments
- Guillaume Witz
First released:
23 September 2024Last updated:
18 February 2025Installs:
226Plugin type:
Reader, Widget
Easy Augment Batch DL
napari-easy-augment-batch-dlA plugin to perform unet based deep learning with a small number of labels and augmentation
- Brian Northan
First released:
18 August 2024Last updated:
16 February 2025Installs:
86Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
In Silico Fate Mapping
in-silico-fate-mappingTODO
- Jordao Bragantini
First released:
27 February 2023Last updated:
14 February 2025Installs:
162Plugin type:
Reader, Widget, Writer
WSI Reader
napari-wsiA plugin to read whole-slide images within napari.
First released:
01 February 2023Last updated:
14 February 2025Installs:
548Plugin type:
Reader, Widget
Napari-EpySeg
napari-epysegNapari plugin to segment epithelia with EpySeg
- Gaëlle Letort
First released:
12 February 2025Last updated:
13 February 2025Installs:
44Plugin type:
Widget
Workflow step:
Image segmentation