The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

Plugins

Browse plugins: 476

napatrackmater

napatrackmater

Import Trackmate XML files for Track Visualization and analysis in Napari.

  • Varun Kapoor
  • Mari Tolonen
  • Jakub Sedzinski
  • First released:

    16 January 2021
  • Last updated:

    01 December 2024
  • Installs:

    6.7K
  • Plugin type:

    information not submitted

Bluesky

napari-bluesky

A plugin for posting to Bluesky from napari

  • Kyle Harrington
  • First released:

    29 November 2024
  • Last updated:

    29 November 2024
  • Installs:

    6
  • Plugin type:

    Widget
Workflow step:
Image annotation
Image segmentation

Napari Phasors

napari-phasors

A simple plugin to use phasor analysis

  • Bruno Pannunzio
  • Marcelo L. Zoccoler
  • Bruno Schuty
  • Leonel Malacrida
  • First released:

    22 November 2024
  • Last updated:

    29 November 2024
  • Installs:

    32
  • Plugin type:

    Reader, Sample data, Widget, Writer
Workflow step:
Image annotation
Image segmentation

BrainGlobe

brainglobe-utils

Shared general purpose tools for the BrainGlobe project

    • First released:

      23 June 2023
    • Last updated:

      28 November 2024
    • Installs:

      24K
    • Plugin type:

      Widget

    Tapenade Processing

    napari-tapenade-processing

    A visual pipeline to process images with Tapenade in Napari

    • Jules Vanaret
    • First released:

      13 August 2024
    • Last updated:

      27 November 2024
    • Installs:

      110
    • Plugin type:

      Widget
    Workflow step:
    Image annotation
    Image segmentation

    Embryo Segmentation

    segment-embryo

    3D Segment ascidian embryos using cellpose. The images are first rescaled to be isotropic and then downscaled, before cellpose is used. The resulting labels are upscaled to match the original data.

    • Volker Baecker
    • First released:

      27 November 2024
    • Last updated:

      27 November 2024
    • Installs:

      17
    • Plugin type:

      Sample data, Widget
    Workflow step:
    Image annotation
    Image segmentation

    napari prism

    napari-prism

    A Python package for the inteRactive and Integrated analySis of Multiplexed tissue microarrays

    • Rafael Tubelleza
    • First released:

      14 November 2024
    • Last updated:

      27 November 2024
    • Installs:

      50
    • Plugin type:

      Reader, Widget

    some-library

    some-library

    dummy_package

    • A
    • First released:

      27 November 2024
    • Last updated:

      27 November 2024
    • Installs:

      182
    • Plugin type:

      information not submitted

    cell-AAP

    cell-AAP

    • Anish Virdi
    • First released:

      28 May 2024
    • Last updated:

      27 November 2024
    • Installs:

      183
    • Plugin type:

      Widget

    napari-spatialdata

    napari-spatialdata

    Interactive visualization of spatial omics data with napari

    • giovanni palla
    • First released:

      06 July 2022
    • Last updated:

      26 November 2024
    • Installs:

      8.1K
    • Plugin type:

      information not submitted

    CellPose Counter

    cellpose-counter

    Cell/nuclei counter using cellpose models

    • Nicolas Buitrago
    • First released:

      21 November 2024
    • Last updated:

      26 November 2024
    • Installs:

      95
    • Plugin type:

      Widget
    Workflow step:
    Image segmentation
    Image annotation

    napari-bbox-spfluo

    napari-bbox-spfluo

    A new layer for bounding boxes in 2+ dimensions. Fork of napari-bbox for spfluo-app needs.

      • First released:

        04 October 2024
      • Last updated:

        26 November 2024
      • Installs:

        236
      • Plugin type:

        information not submitted

      VASCilia

      Napari-VASCilia

      VASCilia (Vision Analysis StereoCilia): A Napari Plugin for Deep Learning-Based 3D Analysis of Cochlear Hair Cell Stereocilia Bundles

      • Yasmin Kassim
      • First released:

        28 June 2024
      • Last updated:

        25 November 2024
      • Installs:

        77
      • Plugin type:

        Widget
      Workflow step:
      Image segmentation
      Image annotation
      Visualization

      CryoET Data Portal

      napari-cryoet-data-portal

      List, preview, and open data from the CZII CryoET Data Portal

      • Andy Sweet
      • First released:

        14 August 2023
      • Last updated:

        25 November 2024
      • Installs:

        437
      • Plugin type:

        Reader, Sample data, Widget

      CellSeg3D

      napari-cellseg3d

      Plugin for cell segmentation in 3D

        • First released:

          25 June 2022
        • Last updated:

          25 November 2024
        • Installs:

          1.2K
        • Plugin type:

          Widget