BrainGlobe
brainglobe-utilsShared general purpose tools for the BrainGlobe project
First released:
23 June 2023Last updated:
28 November 2024Installs:
24KPlugin type:
Widget
Plugins
Browse plugins: 475
Tapenade Processing
napari-tapenade-processingA visual pipeline to process images with Tapenade in Napari
- Jules Vanaret
First released:
13 August 2024Last updated:
27 November 2024Installs:
98Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
Embryo Segmentation
segment-embryo3D Segment ascidian embryos using cellpose. The images are first rescaled to be isotropic and then downscaled, before cellpose is used. The resulting labels are upscaled to match the original data.
- Volker Baecker
First released:
27 November 2024Last updated:
27 November 2024Installs:
9Plugin type:
Sample data, Widget
Workflow step:
Image annotation
Image segmentation
napari prism
napari-prismA Python package for the inteRactive and Integrated analySis of Multiplexed tissue microarrays
- Rafael Tubelleza
First released:
14 November 2024Last updated:
27 November 2024Installs:
47Plugin type:
Reader, Widget
some-library
some-librarydummy_package
- A
First released:
27 November 2024Last updated:
27 November 2024Installs:
14Plugin type:
information not submitted
cell-AAP
cell-AAP- Anish Virdi
First released:
28 May 2024Last updated:
27 November 2024Installs:
180Plugin type:
Widget
napari-spatialdata
napari-spatialdataInteractive visualization of spatial omics data with napari
- giovanni palla
First released:
06 July 2022Last updated:
26 November 2024Installs:
7.9KPlugin type:
information not submitted
CellPose Counter
cellpose-counterCell/nuclei counter using cellpose models
- Nicolas Buitrago
First released:
21 November 2024Last updated:
26 November 2024Installs:
64Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
napari-bbox-spfluo
napari-bbox-spfluoA new layer for bounding boxes in 2+ dimensions. Fork of napari-bbox for spfluo-app needs.
First released:
04 October 2024Last updated:
26 November 2024Installs:
228Plugin type:
information not submitted
VASCilia
Napari-VASCiliaVASCilia (Vision Analysis StereoCilia): A Napari Plugin for Deep Learning-Based 3D Analysis of Cochlear Hair Cell Stereocilia Bundles
- Yasmin Kassim
First released:
28 June 2024Last updated:
25 November 2024Installs:
76Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
Visualization
CryoET Data Portal
napari-cryoet-data-portalList, preview, and open data from the CZII CryoET Data Portal
- Andy Sweet
First released:
14 August 2023Last updated:
25 November 2024Installs:
434Plugin type:
Reader, Sample data, Widget
CellSeg3D
napari-cellseg3dPlugin for cell segmentation in 3D
First released:
25 June 2022Last updated:
25 November 2024Installs:
1.2KPlugin type:
Widget
skan
skanSkeleton analysis in Python
First released:
08 November 2016Last updated:
23 November 2024Installs:
66KPlugin type:
Widget
Napari Phasors
napari-phasorsA simple plugin to use phasor analysis
- Bruno Pannunzio
- Marcelo L. Zoccoler
- Bruno Schuty
First released:
22 November 2024Last updated:
22 November 2024Installs:
13Plugin type:
Reader, Sample data, Widget, Writer
Workflow step:
Image segmentation
Image annotation
Cryo-FIB/SEM Image Stacks Post-Processing
napari-cryofibsem-imgprocA napari plugin for artifact removal, noise reduction, contrast enhancement and stack brightness correction of Cryo-FIB/SEM image stacks.
- Shaina V. To
First released:
20 September 2024Last updated:
19 November 2024Installs:
49Plugin type:
Sample data, Widget