T-MIDAS
napari-tmidasTissue Microscopy Image Data Analysis Suite
- Marco Meer
First released:
05 March 2025Last updated:
04 April 2025Installs:
67Plugin type:
Reader, Sample data, Widget, Writer
Workflow step:
Image annotation
Image segmentation
Plugins
Browse plugins: 496
mKw RopSeg
mkw-ropcopNapari plugin for ROP data copying and segmentation assistance.
First released:
03 April 2025Last updated:
03 April 2025Installs:
0Plugin type:
Widget
NuclePhaser
napari-nuclephaserA Napari plugin to detect and count nuclei on phase contrast images
- Nikita Voloshin
First released:
02 April 2025Last updated:
03 April 2025Installs:
6Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
Svetlana
napari-svetlanaA classification plugin for the ROIs of a segmentation mask.
- Clément Cazorla
First released:
22 November 2022Last updated:
03 April 2025Installs:
2.2KPlugin type:
Reader, Widget, Writer
movement
movementAnalysis of body movement
First released:
02 April 2020Last updated:
03 April 2025Installs:
3.9KPlugin type:
Widget
neurofly
neuroflyA framework to annotate single neurons at whole-brain scale
First released:
30 October 2024Last updated:
03 April 2025Installs:
145Plugin type:
Widget
samcell-napari
samcell-napariA napari plugin for cell segmentation with SAMCell 1.0
- Saahil Sanganeriya
First released:
02 April 2025Last updated:
02 April 2025Installs:
19Plugin type:
Sample data, Widget
napari-stitcher
napari-stitcherStitch napari image layers in 2-3D+t
- Marvin Albert
First released:
18 October 2024Last updated:
02 April 2025Installs:
157Plugin type:
Reader, Sample data, Widget, Writer
DINOSim Segmentation
napari-dinosimA simple plugin to use DinoSim in napari
- Aitor Gonzalez-Marfil
First released:
05 March 2025Last updated:
02 April 2025Installs:
106Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
Hyperspectral Imaging Analysis Plugin
napari-hsi-analysisNapari plugin to perform analysis on Hyperspectral Imaging datasets.
- Alessia Di Benedetto
First released:
12 March 2025Last updated:
01 April 2025Installs:
59Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
napari ARCOS
arcos-guiA napari plugin to detect and visualize collective signaling events
- Benjamin Grädel
First released:
24 February 2022Last updated:
01 April 2025Installs:
710Plugin type:
Sample data, Widget
EpiCure
epicureNapari plugin to manually correct epithelia segmentation in movies
- Gaëlle Letort
First released:
18 October 2024Last updated:
01 April 2025Installs:
180Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
psf-analysis-CFIM
psf-analysis-CFIMA continuation of napari_psf_analysis, developed for CFIM - KU
- Markus L. Bille
First released:
11 February 2025Last updated:
28 March 2025Installs:
118Plugin type:
Reader, Widget
Mouse lungs segmentation
unet-lungs-segmentation3D U-Net model for the segmentation of the lungs in mice CT scans.
- Quentin Chappuis
- Center for Imaging
- Ecole Polytechnique Federale de Lausanne (EPFL)
First released:
12 March 2025Last updated:
28 March 2025Installs:
125Plugin type:
Sample data, Widget
Labels Control
napari-labelsAdding intuitive label color management, allowing custom class colors, per-class opacity, and colormap control to enhance visual clarity.
- Lars Krämer
First released:
26 March 2025Last updated:
28 March 2025Installs:
67Plugin type:
Widget