napari LF
napari-LFLight field imaging plugin for napari
- Geneva Schlafly
- Amitabh Verma
- Rudolf Oldenbourg
First released:
21 July 2022Last updated:
13 November 2024Installs:
169Plugin type:
Reader, Sample data, Widget, Writer
Plugins
Browse plugins: 467
BacSEG
napari-bacsegBacterial segmentation and analysis platform than can inport/export files in multiple formats. Integrating many tools such as Cellpose, ColiCoords, Oufti/MicrobeTracker.
First released:
24 February 2023Last updated:
13 November 2024Installs:
650Plugin type:
Widget
molSEEQ
napari-molseeqA Napari plugin for extracting single molecule sequences from single/multi-channel SMLM microscopy data.
- Piers Turner
First released:
25 July 2024Last updated:
13 November 2024Installs:
35Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
napari-itk-io
napari-itk-ioFile IO with itk for napari
- Matt McCormick
First released:
28 April 2021Last updated:
13 November 2024Installs:
3.3KPlugin type:
information not submitted
Read CTC format
napari-ctc-ioDrag and drop/write tracks from/to the Cell Tracking Challenge (CTC) format.
- Benjamin Gallusser
First released:
04 June 2024Last updated:
13 November 2024Installs:
439Plugin type:
Reader, Writer
Workflow step:
Visualization
neurofly
neuroflyA framework to annotate single neurons at whole-brain scale
First released:
30 October 2024Last updated:
13 November 2024Installs:
33Plugin type:
information not submitted
napari-cosmos-ts
napari-cosmos-tsnapari plugin for colocalization single-molecule spectroscopy (CoSMoS) time series (TS) analysis
- Marcel Goldschen-Ohm
First released:
11 April 2024Last updated:
13 November 2024Installs:
106Plugin type:
information not submitted
midi-app-controller
midi-app-controllerControl napari with a MIDI controller.
First released:
05 June 2024Last updated:
13 November 2024Installs:
99Plugin type:
Widget
Infer sub-Cellular Object Npe2 plugin
organelle-segmenter-pluginA plugin that enables organelle segmentation, forked from tools from Allen Institute for Cell Science
- Andy Henrie
First released:
13 May 2023Last updated:
12 November 2024Installs:
226Plugin type:
Reader, Widget
Fish Scan
fish-scanPlugin to enhance fish detection and analysis for underwater research
- Arianna Ravera
First released:
14 August 2024Last updated:
12 November 2024Installs:
73Plugin type:
Reader, Sample data, Widget, Writer
Workflow step:
Image segmentation
napatrackmater
napatrackmaterImport Trackmate XML files for Track Visualization and analysis in Napari.
- Varun Kapoor
- Mari Tolonen
- Jakub Sedzinski
First released:
16 January 2021Last updated:
11 November 2024Installs:
6.5KPlugin type:
information not submitted
allencell-segmenter-ml
allencell-segmenter-mlA plugin to leverage ML segmentation in napari
First released:
20 September 2024Last updated:
11 November 2024Installs:
151Plugin type:
Widget
Feature Forest
featureforestA napari plugin for segmentation using vision transformer features
First released:
10 October 2024Last updated:
09 November 2024Installs:
63Plugin type:
Widget
Workflow step:
Image segmentation
Image annotation
MolTrack
napari-moltrackA user-friendly SMLM analysis platfrom for napari, which includes single molecule localisation, tracking, and analysis features.
- Piers Turner
First released:
30 May 2024Last updated:
09 November 2024Installs:
963Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
Cochlea SynapSeg
cochlea-synapsegA plugin to segment cochlear ribbon synapses automatically, as well as edit and adjust
- Cayla Miller
First released:
07 November 2024Last updated:
07 November 2024Installs:
8Plugin type:
Reader, Sample data, Widget, Writer
Workflow step:
Image annotation
Image segmentation