ROXAS AI
A plugin that integrates the ROXAS AI analysis methods for quantitative wood anatomy in the napari platform
A plugin that integrates the ROXAS AI analysis methods for quantitative wood anatomy in the napari platform
This napari plugin was generated with copier using the napari-plugin-template.
Installation¶
You will need github large file storage to download model files. If not using a debian-based distribution, check https://git-lfs.com/, else run:
sudo apt install git-lfsYou then need to activate it with:
git lfs install --skip-repoYou can install napari-roxas-ai via pip:
pip install napari-roxas-aiTo install latest development version:
pip install -e git+https://github.com/roxas-ai/napari-roxas-ai.git#egg=napari-roxas-aiContributing¶
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License¶
Distributed under the terms of the GNU GPL v3.0 license, "napari-roxas-ai" is free and open source software
Issues¶
If you encounter any problems, please file an issue along with a detailed description.
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GitHub activity:
- Stars: 0
- Forks: 0
- Issues + PRs: 1
GitHub activity:
- Stars: 0
- Forks: 0
- Issues + PRs: 1
Requirements:
- magicgui==0.10.0
- napari[all]==0.5.6
- numpy<=2.1.3,>=2.0.2
- opencv-contrib-python-headless==4.11.0.86
- qtpy==2.4.3
- rasterio==1.4.3
- scikit-image<=0.25.2,>=0.24.0
- matplotlib<=3.10.1,>=3.9.4
- torch<2.7.0,>=2.2.0; sys_platform == "linux" and platform_machine == "x86_64"
- torchvision==0.21.0; sys_platform == "linux" and platform_machine == "x86_64"
- torch<2.7.0,>=2.2.0; sys_platform == "win32" and platform_machine == "AMD64"
- torchvision==0.21.0; sys_platform == "win32" and platform_machine == "AMD64"
- torch<2.7.0,>=2.2.0; sys_platform == "darwin" or platform_machine == "arm64"
- torchvision==0.21.0; sys_platform == "darwin" or platform_machine == "arm64"
- pytorch-lightning==2.5.1
- segmentation-models-pytorch==0.4.0
- albumentations==2.0.5
- hydra-core==1.3.2