The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

Intensity Plotter

napari-intensity-plotter

A plugin for plotting intensity profiles with control features in napari.

Workflow step:
Image annotation
Image segmentation

License BSD-3 PyPI Python Version tests codecov napari hub

Overview

napari-intensity-plotter is a plugin for Napari that allows users to plot intensity profiles over selected areas in an image. It includes features for:

  • Adjusting the size of the region for intensity averaging.
  • Saving intensity profiles as CSV files.
  • Exporting plots as high-resolution PNG images.
  • Customizing plot appearance through an intuitive control interface.

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation

You can install napari-intensity-plotter via pip:

pip install napari-intensity-plotter

To install latest development version :

pip install git+https://github.com/Tbrn1103/napari-intensity-plotter.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "napari-intensity-plotter" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.1.4

Last updated:

  • 20 October 2024

First released:

  • 20 October 2024

License:

Supported data:

  • Information not submitted

Plugin type:

GitHub activity:

  • Stars: 0
  • Forks: 0
  • Issues + PRs: 0

Python versions supported:

Operating system:

Requirements:

  • numpy
  • magicgui
  • qtpy
  • scikit-image