napari NLM
NLM (non local means) denoising
GPU accelerated non local means (NLM) denoising plugin for napari (WIP)
- currently only supports single-channel 2D or 3D images
- requires a OpenCL capable GPU
Installation
You can install napari-nlm via [pip]:
pip install napari-nlm
Usage
- Open example image
Open Sample > napari-nlm: noisy bricks - Adjust parameters
sigma: denoising strength (the larger sigma, the greater the smoothing)patch_radius: size of local patches, 2 or 3 is a good defaultsearch_radius: size of search area around each pixel to find similar patches, 7-11 is a good default
- Denoise by pressing
run
License
Distributed under the terms of the [BSD-3] license, "napari-nlm" is free and open source software
Version:
- 0.0.4
Last updated:
- 2022-07-26
First released:
- 2022-07-25
License:
- BSD-3-Clause
Supported data:
- Information not submitted
Plugin type:
Open extension:
Save extension:
Operating system:
- Information not submitted
Requirements:
- numpy
- magicgui
- qtpy
- pyopencl (==2022.1.5)
- gputools
- scikit-image
- tox ; extra == 'testing'
- pytest ; extra == 'testing'
- pytest-cov ; extra == 'testing'
- pytest-qt ; extra == 'testing'
- napari ; extra == 'testing'
- pyqt5 ; extra == 'testing'