Segment Anything V2
Napari plugin for segment anything version 2 model from meta. Plugin primarily useful for segmenting 3d volumetric data or 3d time series data.
Napari plugin to use segment anything version 2 models from Meta.
Plugin primarily made for segmenting 3d volumetric data or 3d time series data.
Installation¶
You can install napari-SAMV2
via pip:
pip install napari-SAMV2
Pre-requisite of samv2 installation needed:
git clone https://github.com/facebookresearch/segment-anything-2.git
cd segment-anything-2
pip install -e .
The plugin and installation tested with python 3.10 in conda environment with pytorch-cuda=12.1
If you are installing samv2 in a separate environment, you can follow the below tested env,
conda create -n samv2_env python=3.10
conda activate samv2_env
conda install pytorch torchvision torchaudio pytorch-cuda=12.1 -c pytorch -c nvidia
python -m pip install "napari[all]"
git clone https://github.com/facebookresearch/segment-anything-2.git
cd segment-anything-2
pip install -e .
pip install napari-SAMV2
To install latest development version :
pip install git+https://github.com/Krishvraman/napari-SAMV2.git
Usage¶
Middle mouse click - positive point
Ctrl + Middle mouse click - negative point
Time Series Segmentation :
Volume Segmentation :
Reference :
Example Data from in demo videos from, Cell tracking challenge - https://celltrackingchallenge.net/ FlyEM project - https://www.janelia.org/project-team/flyem/hemibrain
License¶
Distributed under the terms of the BSD-3 license, "napari-SAMV2" is free and open source software
Issues¶
If you encounter any problems, please file an issue along with a detailed description.
Supported data:
- Information not submitted
Plugin type:
GitHub activity:
- Stars: 1
- Forks: 0
- Issues + PRs: 0