IMAXT Multiscale Image Napari Plugin

A simple plugin to use with napari

A napari plugin to visualize multi-resolution images created with the IMAXT mosaic pipeline.

You can install imaxt-multiscale-plugin via pip:

pip install imaxt-multiscale-plugin

Run napari with the name of the sample to visualize either a local path:

napari /storage/imaxt/eglez/processed/stpt/20220606_PDX_AB559_GFP_005503_100x15um

or a sample in S3 storage:

napari s3://imaxtgw/stpt/20220608_DI_PDX_SA535_Tum_5223_04280_100x15um

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Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

Distributed under the terms of the GNU LGPL v3.0 license, "imaxt-multiscale-plugin" is free and open source software

If you encounter any problems, please [file an issue] along with a detailed description.

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