BSD Zero Clause License

3D Slicer License v1.0

Attribution Assurance License

Abstyles License

AdaCore Doc License

Adobe Systems Incorporated Source Code License Agreement

Adobe Display PostScript License

Adobe Glyph List License

Adobe Utopia Font License

Amazon Digital Services License

Academic Free License v1.1

Academic Free License v1.2

Academic Free License v2.0

Academic Free License v2.1

Academic Free License v3.0

Afmparse License

Affero General Public License v1.0

Affero General Public License v1.0 only

Affero General Public License v1.0 or later

GNU Affero General Public License v3.0

GNU Affero General Public License v3.0 only

GNU Affero General Public License v3.0 or later

Aladdin Free Public License

AMD newlib License

AMD's plpa_map.c License

Apple MIT License

AML glslang variant License

Academy of Motion Picture Arts and Sciences BSD

ANTLR Software Rights Notice

ANTLR Software Rights Notice with license fallback

Any OSI License

Any OSI License - Perl Modules

Apache License 1.0

Apache License 1.1

Apache License 2.0

Adobe Postscript AFM License

Adaptive Public License 1.0

App::s2p License

Apple Public Source License 1.0

Apple Public Source License 1.1

Apple Public Source License 1.2

Apple Public Source License 2.0

Arphic Public License

Artistic License 1.0

Artistic License 1.0 w/clause 8

Artistic License 1.0 (Perl)

Artistic License 2.0

ASWF Digital Assets License version 1.0

ASWF Digital Assets License 1.1

Baekmuk License

Bahyph License

Barr License

bcrypt Solar Designer License

Beerware License

Bitstream Charter Font License

Bitstream Vera Font License

BitTorrent Open Source License v1.0

BitTorrent Open Source License v1.1

SQLite Blessing

Blue Oak Model License 1.0.0

Boehm-Demers-Weiser GC License

Boehm-Demers-Weiser GC License (without fee)

Borceux license

Brian Gladman 2-Clause License

Brian Gladman 3-Clause License

BSD 1-Clause License

BSD 2-Clause "Simplified" License

BSD 2-Clause - Ian Darwin variant

BSD 2-Clause - first lines requirement

BSD 2-Clause FreeBSD License

BSD 2-Clause NetBSD License

BSD-2-Clause Plus Patent License

BSD 2-Clause with views sentence

BSD 3-Clause "New" or "Revised" License

BSD 3-Clause acpica variant

BSD with attribution

BSD 3-Clause Clear License

BSD 3-Clause Flex variant

Hewlett-Packard BSD variant license

Lawrence Berkeley National Labs BSD variant license

BSD 3-Clause Modification

BSD 3-Clause No Military License

BSD 3-Clause No Nuclear License

BSD 3-Clause No Nuclear License 2014

BSD 3-Clause No Nuclear Warranty

BSD 3-Clause Open MPI variant

BSD 3-Clause Sun Microsystems

BSD 4-Clause "Original" or "Old" License

BSD 4 Clause Shortened

BSD-4-Clause (University of California-Specific)

BSD 4.3 RENO License

BSD 4.3 TAHOE License

BSD Advertising Acknowledgement License

BSD with Attribution and HPND disclaimer

BSD-Inferno-Nettverk

BSD Protection License

BSD Source Code Attribution - beginning of file variant

BSD Source Code Attribution

Systemics BSD variant license

Systemics W3Works BSD variant license

Eduardo Gonzalez Solares

# IMAXT multiscale napari plugin

[![License GNU LGPL v3.0](https://img.shields.io/pypi/l/imaxt-multiscale-plugin.svg?color=green)](https://github.com/eg266/imaxt-multiscale-plugin/raw/main/LICENSE)
[![PyPI](https://img.shields.io/pypi/v/imaxt-multiscale-plugin.svg?color=green)](https://pypi.org/project/imaxt-multiscale-plugin)
[![Python Version](https://img.shields.io/pypi/pyversions/imaxt-multiscale-plugin.svg?color=green)](https://python.org)
[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/imaxt-multiscale-plugin)](https://napari-hub.org/plugins/imaxt-multiscale-plugin)

A napari plugin to visualize multi-resolution images created with the IMAXT mosaic pipeline.

----------------------------------------------------

## Installation

You can install `imaxt-multiscale-plugin` via [pip]:

    pip install imaxt-multiscale-plugin


## Usage

Run [napari] with the name of the sample to visualize either a local path:

    napari /storage/imaxt/eglez/processed/stpt/20220606_PDX_AB559_GFP_005503_100x15um

or a sample in S3 storage:

    napari s3://imaxtgw/stpt/20220608_DI_PDX_SA535_Tum_5223_04280_100x15um
    
## Screenshots

![Alt text](https://gitlab.developers.cam.ac.uk/astronomy/camcead/imaxt/imaxt-multiscale-plugin/-/raw/main/assets/napari1.png "a title")
![Alt text](https://gitlab.developers.cam.ac.uk/astronomy/camcead/imaxt/imaxt-multiscale-plugin/-/raw/main/assets/napari2.png "a title")
![Alt text](https://gitlab.developers.cam.ac.uk/astronomy/camcead/imaxt/imaxt-multiscale-plugin/-/raw/main/assets/napari3.png "a title")
![Alt text](https://gitlab.developers.cam.ac.uk/astronomy/camcead/imaxt/imaxt-multiscale-plugin/-/raw/main/assets/napari4.png "a title")

## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure
the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [GNU LGPL v3.0] license,
"imaxt-multiscale-plugin" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin

[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/


IMAXT multiscale napari plugin




A napari plugin to visualize multi-resolution images created with the IMAXT mosaic pipeline.

Installation
You can install imaxt-multiscale-plugin via pip:
pip install imaxt-multiscale-plugin

Usage
Run napari with the name of the sample to visualize either a local path:
napari /storage/imaxt/eglez/processed/stpt/20220606_PDX_AB559_GFP_005503_100x15um

or a sample in S3 storage:
napari s3://imaxtgw/stpt/20220608_DI_PDX_SA535_Tum_5223_04280_100x15um

Screenshots




Contributing
Contributions are very welcome. Tests can be run with tox, please ensure
the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the GNU LGPL v3.0 license,
"imaxt-multiscale-plugin" is free and open source software
Issues
If you encounter any problems, please [file an issue] along with a detailed description.

imaxt-multiscale-plugin

IMAXT Multiscale Image Napari Plugin

A simple plugin to use with napari

Installation¶

Usage¶

Screenshots¶

Contributing¶

License¶

Issues¶