U-FISH

Deep learning-based FISH spot calling method.

  • Weize Xu

License MIT PyPI Python Version tests napari hub

Deep learning-based FISH spot calling method. The napari plugin for U-FISH.

Links

TODO List

  • [x] Sample image
  • [x] Inference interface
    • [x] Inference parameters
    • [x] Load model from path
    • [x] Help information dialog
  • [x] Training interface

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation

You can install napari-ufish via pip:

pip install napari-ufish

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-ufish" is free and open source software

Issues

If you encounter any problems, please [file an issue] along with a detailed description.

Version:

  • 0.0.1

Last updated:

  • 2023-09-30

First released:

  • 2023-09-30

License:

  • MIT

Supported data:

  • Information not submitted

Plugin type:

Open extension:

Save extension:

Python versions supported:

Operating system:

  • Information not submitted

Requirements:

  • numpy
  • magicgui
  • qtpy
  • scikit-image
  • ufish
  • napari
  • tox ; extra == 'testing'
  • pytest ; extra == 'testing'
  • pytest-cov ; extra == 'testing'
  • pytest-qt ; extra == 'testing'
  • pyqt5 ; extra == 'testing'
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