trackastra

Napari plugin for cell tracking with trackastra.

A napari plugin for cell tracking with trackastra.

demo

After that, install the latest version of this plugin from PyPI with:

pip install napari-trackastra

Notes:

For tracking with an integer linear program (ILP, which is optional), follow the installation instructions of the main trackastra package.
On Windows currently only supported for Python 3.10.

trackastra expects a timeseries of raw images and corresponding segmentations masks as input.
We provide some demo data at File > Open Sample > trackastra.
Tracked cells can be directly saved to Cell Tracking Challenge format.
Results can be drag-and-dropped back into napari for inspection.

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