trackastra
Napari plugin for cell tracking with trackastra.
A napari plugin for cell tracking with trackastra.
Installation
-
Please install napari as outlined here.
-
After that, install the latest version of this plugin from PyPI with:
pip install napari-trackastra
Notes:
- For tracking with an integer linear program (ILP, which is optional), follow the installation instructions of the main
trackastrapackage. - On Windows currently only supported for Python 3.10.
Usage
trackastraexpects a timeseries of raw images and corresponding segmentations masks as input.- We provide some demo data at
File > Open Sample > trackastra. - Tracked cells can be directly saved in
- Results can be drag-and-dropped back into napari for inspection.
Version:
- 0.2.1
Last updated:
- 2025-10-06
First released:
- 2024-05-30
License:
- Copyright (c) 2024, Martin Wei...
Supported data:
- Information not submitted
Plugin type:
Open extension:
Save extension:
Operating system:
- Information not submitted
Requirements:
- numpy
- scikit-image
- trackastra>=0.4.1
- napari-ctc-io
- napari-geff>=0.0.3
- tox; extra == "testing"
- pytest; extra == "testing"
- pytest-cov; extra == "testing"
- pytest-qt; extra == "testing"
- napari; extra == "testing"
- pyqt5; extra == "testing"