Napari Topological Skeleton Analysis

Extracts and analyses topological skeletons as undirected graphs. For usage instructions and API reference, please refer to the documentation:

Documentation.¶

The functionality of the plugin comprises the following:

• Extracting the topological skeleton of a binary image using the medial axis transform.
• Extracting the netowrk of the skeleton as an undirected networkx graph.
• Computing features of individual skeleton components as well as the entire skeleton network.

---

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation¶

You can install napari-toska via pip:

pip install napari-toska

Contributing¶

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License¶

Distributed under the terms of the BSD-3 license, "napari-toska" is free and open source software

Issues¶

If you encounter any problems, please [file an issue] along with a detailed description.