The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

napari-opt-handler

napari-opt-handler

Optical Projection Tomography preprocessing plugin for napari

    License BSD-3 PyPI Python Version tests codecov napari hub

    Optical Projection Tomography preprocessing plugin for napari


    This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

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    🛀 Usage¶

    Starting point¶

    1. Data streamed from ImSwitch OPT widget (see details here[LINK])
    2. Loaded images as data stack
    3. Other stack 3D volume data formats

    Global settings¶

    Tracking

    Inplace operations

    Corrections¶

    Dark-field correction Bright-field correction Bad-pixel correction Intensity correction

    Other¶

    Binning ROI -Log

    💻 Installation¶

    You can install napari-opt-handler via pip:

    pip install napari-opt-handler

    To install latest development version :

    pip install git+https://github.com/QBioImaging/napari-opt-handler.git

    Contributing¶

    Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

    🚓 License¶

    Distributed under the terms of the BSD-3 license, "napari-opt-handler" is free and open source software

    🔨 Issues¶

    If you encounter any problems, please file an issue along with a detailed description.

    Version:

    • 0.0.3

    Last updated:

    • 03 July 2024

    First released:

    • 03 July 2024

    License:

    Supported data:

    • Information not submitted

    Plugin type:

    • Information not submitted

    GitHub activity:

    • Stars: 1
    • Forks: 0
    • Issues + PRs: 1

    Python versions supported:

    Operating system:

    Requirements:

    • numpy
    • magicgui
    • scikit-image
    • matplotlib