OPT Preprocessing
Optical Projection Tomography preprocessing plugin for napari
Optical Projection Tomography preprocessing plugin for napari
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
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🛀 Usage
Starting point
- Data streamed from ImSwitch OPT widget (see details here[LINK])
- Loaded images as data stack
- Other stack 3D volume data formats
Global settings
Tracking
Inplace operations
Corrections
Dark-field correction Bright-field correction Bad-pixel correction Intensity correction
Other
Binning ROI -Log
💻 Installation
You can install napari-opt-handler via pip:
pip install napari-opt-handler
To install latest development version :
pip install git+https://github.com/QBioImaging/napari-opt-handler.git
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
🚓 License
Distributed under the terms of the BSD-3 license, "napari-opt-handler" is free and open source software
🔨 Issues
If you encounter any problems, please file an issue along with a detailed description.
Version:
- 0.0.3
Last updated:
- 2024-07-03
First released:
- 2024-07-03
License:
- Copyright (c) 2024, David Pale...
Supported data:
- Information not submitted
Plugin type:
Open extension:
Save extension:
Operating system:
- Information not submitted
Requirements:
- numpy
- magicgui
- scikit-image
- matplotlib
- magicgui ; extra == 'napari'
- napari[pyqt5] ; extra == 'napari'
- pooch >=1 ; extra == 'napari'
- qtpy ; extra == 'napari'
- pre-commit ; extra == 'testing'
- pytest ; extra == 'testing'
- pytest-cov ; extra == 'testing'
- pytest-qt ; extra == 'testing'
- pytest-mock ; extra == 'testing'
- pytest-timeout ; extra == 'testing'
- tox ; extra == 'testing'