Mouse Tumour Annotation

A plug-in to facilitate annotation of tumours in mouse CT-scans using a fine-tuned UNet model

  • Bastien Chesaux Dapia

License BSD-3 PyPI Python Version tests codecov napari hub npe2 Copier

A plug-in to facilitate annotation of tumours in mouse CT-scans using a fine-tuned UNet model


This napari plugin was generated with copier using the napari-plugin-template (None).

Installation

You can install napari-mouse-tumour-annotation via pip:

pip install napari-mouse-tumour-annotation

If napari is not already installed, you can install napari-mouse-tumour-annotation with napari and Qt via:

pip install "napari-mouse-tumour-annotation[all]"

To install latest development version :

pip install git+https://github.com/bastienchesaux/napari-mouse-tumour-annotation.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "napari-mouse-tumour-annotation" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.1.0

Last updated:

  • 2026-03-17

First released:

  • 2026-03-17

License:

  • Copyright (c) 2026, Bastien Ch...

Supported data:

  • Information not submitted

Plugin type:

Open extension:

Save extension:

Python versions supported:

Operating system:

  • Information not submitted

Requirements:

  • numpy
  • magicgui
  • qtpy
  • scikit-image
  • monai>=1.5.2
  • huggingface-hub>=1.6.0
  • torch==2.8.0
  • napari[all]; extra == "all"
Website by the napari team, original design by CZI. Go to napari main website.