Microscopy Metrics

A plugin using the microscopy metrics module for doing quality control with PSFs in Napari.

This napari plugin was generated with copier using the napari-plugin-template (None).

Installation

Python 3.12 is required to use the plugin in best conditions

You can install napari-microscopy-metrics via pip:

pip install napari-microscopy-metrics

If napari is not already installed, you can install napari-microscopy-metrics with napari and Qt via:

pip install "napari-microscopy-metrics[all]"

To install latest development version :

pip install git+https://github.com/MontpellierRessourcesImagerie/napari-microscopy-metrics.git

You will also need to install microscopy-metrics and auto-options from MRI github :

pip install --upgrade git+https://github.com/MontpellierRessourcesImagerie/microscopy-metrics.git

pip install --upgrade git+https://github.com/MontpellierRessourcesImagerie/auto-options-python.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the [CeCILL-B] license, "napari-microscopy-metrics" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.