napari-micromanager
Micro-Manager GUI interface in napari.
GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets
Installation
You can install napari-micromanager via pip:
pip install napari-micromanager
You will also need a Qt backend such as PySide2/6, or PyQt5/6. PyQt is
preferred and receives more testing. If you've previously installed napari
into this environment with pip install napari[all], then you will likely
already have it. If not, you will also need to install a Qt backend of your
choice:
pip install pyqt5 # or any of {pyqt5, pyqt6, pyside2, pyside6}
Getting micromanager adapters
The easiest way to get the micromanager adapters is to use:
mmcore install
this will install micromanager to the pymmcore_plus folder in your site-package; use this to see where:
python -c "from pymmcore_plus import find_micromanager; print(find_micromanager())"
alternatively, you can direct pymmcore_plus to your own micromanager installation with the MICROMANAGER_PATH
environment variable:
export MICROMANAGER_PATH='/path/to/Micro-Manager-...'
Contributing
Contributions are very welcome.
Launching napari with plugin
You can launch napari and automatically load this plugin using the launch-dev.py script:
python launch-dev.py
Alternatively you can run:
napari -w napari-micromanager
License
Distributed under the terms of the BSD-3 license, "napari-micromanager" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
Version:
- 0.1.3
Last updated:
- 2024-09-26
First released:
- 2021-08-15
License:
- BSD 3-Clause
Operating system:
- Information not submitted
Requirements:
- fonticon-materialdesignicons6
- napari>=0.4.13
- pymmcore-plus>=0.9.3
- pymmcore-widgets>=0.7.0rc1
- superqt>=0.5.1
- tifffile
- useq-schema>=0.4.1
- zarr
- mda-simulator; extra == 'dev'
- mypy; extra == 'dev'
- pre-commit; extra == 'dev'
- ruff; extra == 'dev'
- mkdocs-material; extra == 'docs'
- mkdocstrings-python; extra == 'docs'
- pyqt5; extra == 'pyqt5'
- pyqt6; extra == 'pyqt6'
- pyside2; extra == 'pyside2'
- pyside6; extra == 'pyside6'
- pytest; extra == 'test'
- pytest-cov; extra == 'test'
- pytest-qt; extra == 'test'