MesoField

napari-mesofield

A plugin that extends napari functionality as an image acquisition software to automate multi-modal experimental control, setup, and analysis for mesoscopic widefield acquistion of 1P epiflourescent signals in the mouse cortex.

Workflow step:
Image annotation
Image segmentation

License Mozilla Public License 2.0 PyPI Python Version tests codecov napari hub

A plugin that extends napari functionality as an image acquisition software to automate multi-modal experimental control, setup, and analysis for mesoscopic widefield acquistion of 1P epiflourescent signals in the mouse cortex.


This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation

You can install napari-mesofield via pip:

pip install napari-mesofield

To install latest development version :

pip install git+https://github.com/Gronemeyer/napari-mesofield.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the Mozilla Public License 2.0 license, "napari-mesofield" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.1.0

Last updated:

  • 13 July 2024

First released:

  • 13 July 2024

License:

Supported data:

  • Information not submitted

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GitHub activity:

  • Stars: 0
  • Forks: 0
  • Issues + PRs: 0

Python versions supported:

Operating system:

Requirements:

  • numpy
  • magicgui
  • qtpy
  • scikit-image