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# napari-exodeepfinder

[![License GNU GPL v3.0](https://img.shields.io/pypi/l/napari-exodeepfinder.svg?color=green)](https://github.com/deep-finder/napari-exodeepfinder/raw/main/LICENSE)
[![PyPI](https://img.shields.io/pypi/v/napari-exodeepfinder.svg?color=green)](https://pypi.org/project/napari-exodeepfinder)
[![Python Version](https://img.shields.io/pypi/pyversions/napari-exodeepfinder.svg?color=green)](https://python.org)
[![tests](https://github.com/deep-finder/napari-exodeepfinder/workflows/tests/badge.svg)](https://github.com/deep-finder/napari-exodeepfinder/actions)
[![codecov](https://codecov.io/gh/deep-finder/napari-exodeepfinder/branch/main/graph/badge.svg)](https://codecov.io/gh/deep-finder/napari-exodeepfinder)
[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-exodeepfinder)](https://napari-hub.org/plugins/napari-exodeepfinder)

A napari plugin for the ExoDeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities.
An orthoslice view has been added for an easier visualisation and annotation process.

----------------------------------

This [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.



## Installation

1. Create a conda environment with python 3.10: `conda create -n napari-exodeepfinder python=3.10`
1. Activate the environment: `conda activate napari-exodeepfinder`
1. Install napari: `pip install napari-exodeepfinder`

## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure
the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [GNU GPL v3.0] license,
"napari-exodeepfinder" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin

[file an issue]: https://github.com/deep-finder/napari-exodeepfinder/issues

[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/

napari-exodeepfinder






A napari plugin for the ExoDeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities.
An orthoslice view has been added for an easier visualisation and annotation process.

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation

Create a conda environment with python 3.10: conda create -n napari-exodeepfinder python=3.10
Activate the environment: conda activate napari-exodeepfinder
Install napari: pip install napari-exodeepfinder

Contributing
Contributions are very welcome. Tests can be run with tox, please ensure
the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the GNU GPL v3.0 license,
"napari-exodeepfinder" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.

napari-exodeepfinder

A napari plugin for the ExpDeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.

napari-exodeepfinder

A napari plugin for the ExpDeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.

Installation¶

Contributing¶

License¶

Issues¶