napari-crop

Crop regions in napari manually

Crop in any dimension

Cut a volume using a plane

Note: this functionality currently only works with 3D data

Usage¶

Create a new shapes layer to annotate the region you would like to crop:

Use the rectangle tool to annotate a region. Start the crop tool from the Tools > Utilities > Crop region menu. Click the Run button to crop the region.

You can also use the Select shapes tool to move the rectangle to a new place and crop another region by clicking on Run.

Hint: You can also use the napari-tabu plugin to send all your cropped images to a new napari window.

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This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.

Installation¶

You can install napari-crop via pip:

pip install napari-crop

Contributing¶

Contributions are very welcome.

License¶

Distributed under the terms of the BSD-3 license, "napari-crop" is free and open source software

Issues¶

If you encounter any problems, please create a thread on image.sc along with a detailed description and tag @haesleinhuepf.