Conidie

A segmentation tool to get conidie and hyphe

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This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

This plugin is a use case for obtaining conidia and hyphae surface from images. This plugin is a private tool dedicated exclusively to the work of the QUASAV team.

Installation¶

This private tool cannot be found in the built-in napari. The installation therefore follows two steps:

1 - Install latest development version :

git clone https://github.com/hereariim/napari-conidie.git

Or:

Download napari-conidie zip file

2 - Drag and drop napari-conidie file into the built-in

Contributing¶

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License¶

Distributed under the terms of the BSD-3 license, "napari-conidie" is free and open source software

Issues¶

If you encounter any problems, please file an issue along with a detailed description.