The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

Bud Cell Segmenter

napari-bud-cell-segmenter

A plugin to segment embryonic mammary bud cells and detect 2 RNA probes

License BSD-3 PyPI Python Version tests codecov napari hub

A plugin to segment embryonic mammary bud cells and detect 2 RNA probes


This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation

You can install napari-bud-cell-segmenter via pip:

pip install napari-bud-cell-segmenter

To install latest development version :

pip install git+https://github.com/AurelienMaillot/napari-bud-cell-segmenter.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "napari-bud-cell-segmenter" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.1.4

Last updated:

  • 16 December 2022

First released:

  • 14 November 2022

License:

Supported data:

  • Information not submitted

Open extension:

Save extension:

Save layers:

GitHub activity:

  • Stars: 0
  • Forks: 0
  • Issues + PRs: 0

Python versions supported:

Operating system:

Requirements:

  • numpy
  • magicgui
  • qtpy
  • pandas
  • scikit-image
  • napari
  • tifffile
  • matplotlib
  • scipy