single-cell segmentation

Performing image analysis by visiting biopb endpoints

  • Ji Yu

License MIT PyPI Python Version tests codecov napari hub

Performing single-cell segmentation by visiting biopb endpoints

Installation

You can install napari-biopb via pip:

pip install napari-biopb

To install latest development version :

pip install git+https://github.com/jiyuuchc/napari-biopb.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-biopb" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.1.4

Last updated:

  • 2025-03-07

First released:

  • 2025-02-02

License:

  • MIT

Supported data:

  • Information not submitted

Plugin type:

Open extension:

Save extension:

Python versions supported:

Operating system:

  • Information not submitted

Requirements:

  • numpy
  • magicgui
  • qtpy
  • scikit-image
  • biopb
  • opencv-python-headless
  • grpcio_tools
  • vedo
  • tox; extra == "testing"
  • pytest; extra == "testing"
  • pytest-cov; extra == "testing"
  • pytest-qt; extra == "testing"
  • napari; extra == "testing"
  • pyqt5; extra == "testing"
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