Bfio
A plugin to read and write images using bfio within napari
A plugin to read and write images using bfio within napari
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Installation
You can install napari-bfio via pip:
pip install napari-bfio
napari-bfio depends on bfio package to read/write the data. By default, bfio package and the core dependencies (numpy, tifffile, imagecodecs, scyjava) are installed during the installation process of napari-bfio.
To install latest development version :
pip install git+https://github.com/PolusAI/napari-bfio.git
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the MIT license, "napari-bfio" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
Version:
- 0.0.4
Last updated:
- 2023-09-25
First released:
- 2023-08-18
License:
- MIT
Supported data:
- Information not submitted
Open extension:
- *.obf
- *.bip
- *.hx
- *.img
- *.msr
- *.mdb
- *.c01
- *.png
- *.fits
- *.ndpis
- *.sif
- *.lof
- *.sdt
- *.aim
- *.dcm
- *.jpk
- *.1sc
- *.ims
- *.mrcs
- *.vws
- *.spe
- *.bin
- *.seq
- *.mrc
- *.obsep
- *.eps
- *.frm
- *.i2i
- *.liff
- *.rec
- *.st
- *.ipl
- *.nii.gz
- *.avi
- *.dicom
- *.ome.tiff
- *.pnl
- *.ids
- *.ffr
- *.inr
- *.xqd
- *.gel
- *.vff
- *.spc
- *.lsm
- *.jpx
- *.nd2
- *.afi
- *.gif
- *.tf2
- *.sm2
- *.sldy
- *.fli
- *.tnb
- *.sxm
- *.xys
- *.ali
- *.oir
- *.pgm
- *.tif
- *.pds
- *.hdf
- *.r3d
- *.im3
- *.oif
- *.map
- *.am
- *.lms
- *.psd
- *.top
- *.zfp
- *.dm3
- *.nrrd
- *.mng
- *.wat
- *.wpi
- *.ppm
- *.nhdr
- *.xqf
- *.exp
- *.dm4
- *.cfg
- *.dat
- *.scn
- *.v
- *.sld
- *.btf
- *.mod
- *.vms
- *.dm2
- *.pict
- *.apl
- *.xlef
- *.nii
- *.vsi
- *.lim
- *.pic
- *.nef
- *.jpf
- *.omp2info
- *.l2d
- *.qptiff
- *.jpg
- *.dti
- *.pbm
- *.cif
- *.al3d
- *.labels
- *.pcoraw
- *.ome.zarr
- *.afm
- *.par
- *.mnc
- *.rcpnl
- *.tf8
- *.jpeg
- *.mtb
- *.pr3
- *.zfr
- *.ps
- *.dv
- *.ndpi
- *.spi
- *.mov
- *.ch5
- *.pcx
- *.stk
- *.stp
- *.h5
- *.zvi
- *.svs
- *.hdr
- *.grey
- *.bif
- *.epsi
- *.mvd2
- *.oib
- *.xdce
- *.fff
- *.htd
- *.jp2
- *.cxd
- *.klb
- *.res
- *.tga
- *.arf
- *.db
- *.bmp
- *.cr2
- *.ipm
- *.lif
- *.fdf
- *.ics
- *.crw
- *.naf
- *.tfr
- *.raw
- *.acff
- *.his
- *.mea
- *.mrw
- *.sm3
- *.hed
- *.dib
- *.tiff
- *.2fl
- *.j2k
- *.nd
- *.amiramesh
- *.ipw
- *.flex
- *.txt
- *.ome.tif
- *.xv
- *.lei