Bfio
A plugin to read and write images using bfio within napari
A plugin to read and write images using bfio within napari
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Installation
You can install napari-bfio via pip:
pip install napari-bfio
napari-bfio depends on bfio package to read/write the data. By default, bfio package and the core dependencies (numpy, tifffile, imagecodecs, scyjava) are installed during the installation process of napari-bfio.
To install latest development version :
pip install git+https://github.com/PolusAI/napari-bfio.git
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the MIT license, "napari-bfio" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
Version:
- 0.0.4
Last updated:
- 2023-09-25
First released:
- 2023-08-18
License:
- MIT
Supported data:
- Information not submitted
Open extension:
- *.1sc
- *.afm
- *.htd
- *.msr
- *.rcpnl
- *.his
- *.rec
- *.img
- *.2fl
- *.ome.zarr
- *.zfr
- *.hdf
- *.tf8
- *.dib
- *.bif
- *.vws
- *.cr2
- *.bip
- *.jpg
- *.pr3
- *.cif
- *.xys
- *.stk
- *.sm3
- *.dti
- *.mng
- *.bin
- *.sxm
- *.obf
- *.nef
- *.wpi
- *.h5
- *.v
- *.obsep
- *.mtb
- *.vff
- *.mod
- *.crw
- *.nrrd
- *.nii.gz
- *.apl
- *.xqf
- *.dv
- *.ndpis
- *.nhdr
- *.am
- *.cxd
- *.sdt
- *.eps
- *.xqd
- *.ch5
- *.cfg
- *.ali
- *.psd
- *.fli
- *.i2i
- *.pbm
- *.vms
- *.fits
- *.ffr
- *.naf
- *.jp2
- *.nd2
- *.par
- *.tif
- *.sif
- *.btf
- *.j2k
- *.ppm
- *.ps
- *.dicom
- *.gif
- *.pcx
- *.mrw
- *.oib
- *.liff
- *.al3d
- *.jpf
- *.qptiff
- *.epsi
- *.oif
- *.dm4
- *.pnl
- *.sldy
- *.zfp
- *.lof
- *.bmp
- *.pic
- *.tnb
- *.omp2info
- *.tf2
- *.xlef
- *.lms
- *.fdf
- *.xv
- *.raw
- *.seq
- *.flex
- *.ics
- *.pict
- *.exp
- *.oir
- *.lim
- *.res
- *.dm3
- *.hed
- *.tfr
- *.ids
- *.amiramesh
- *.tga
- *.ndpi
- *.labels
- *.afi
- *.db
- *.pcoraw
- *.mnc
- *.tiff
- *.lif
- *.im3
- *.ipl
- *.ims
- *.hx
- *.dcm
- *.mov
- *.fff
- *.sld
- *.mdb
- *.stp
- *.inr
- *.mvd2
- *.wat
- *.jpx
- *.lei
- *.ipm
- *.hdr
- *.nd
- *.scn
- *.pgm
- *.ome.tif
- *.grey
- *.avi
- *.ipw
- *.pds
- *.spe
- *.st
- *.map
- *.aim
- *.vsi
- *.gel
- *.txt
- *.spi
- *.frm
- *.zvi
- *.nii
- *.jpeg
- *.lsm
- *.spc
- *.mrc
- *.dat
- *.sm2
- *.jpk
- *.arf
- *.png
- *.r3d
- *.l2d
- *.c01
- *.svs
- *.acff
- *.top
- *.klb
- *.mea
- *.dm2
- *.mrcs
- *.xdce
- *.ome.tiff