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Amend segmentation and track

napari-amdtrk

Manually amend segmentation and track within napari

View project data

This plugin provides an interface to manually amend 2D segmentation and track (time-series images) within napari. It contains a reader to parse images and object tables in a file folder. Amended data can be saved through the plugin. The plugin aims to speed up data curation for quantitative analysis and labeling for the machine learning ground truth.

Please visit out GitHub hoempage for quick start guide, sample data and detailed descriptions of the input data.

You can also find a demo video here.

Version:

  • 1.1.0

Last updated:

  • 06 May 2023

First released:

  • 08 April 2023

License:

Supported data:

  • Information not submitted

Plugin type:

Open extension:

GitHub activity:

  • Stars: 4
  • Forks: 1
  • Issues + PRs: 1

Python versions supported:

Operating system:

Requirements:

  • numpy (<1.24)
  • magicgui
  • qtpy
  • trackpy
  • pandas
  • scikit-image
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