seu-3d
seu-3d3d spatial visualization napari plugin
First released:
26 May 2025Last updated:
11 July 2025Installs:
205Plugin type:
Widget
Plugins
Browse plugins: 514
SimpleAnnotate
napari-simpleannotateA napari plugin for simple image and video annotation
First released:
29 October 2023Last updated:
11 July 2025Installs:
189Plugin type:
Widget
napari-UniSPAC
napari-UniSPACA Unified Segmentation framework for Proofreading and Annotation in Connectomics (UniSPAC)!
First released:
07 February 2025Last updated:
11 July 2025Installs:
83Plugin type:
Widget
PartSeg
PartSegPartSeg is python GUI and set of napari plugins for bio imaging analysis especially nucleus analysis,
First released:
14 January 2019Last updated:
10 July 2025Installs:
8.4KPlugin type:
Reader, Widget, Writer
Label Manager
napari-label-managerA plugin for management of label colormap generation and opacity control
- JH Wang
First released:
10 July 2025Last updated:
10 July 2025Installs:
7Plugin type:
Widget
MolTrack
napari-moltrackA user-friendly SMLM analysis platfrom for napari, which includes single molecule localisation, tracking, and analysis features.
- Piers Turner
First released:
30 May 2024Last updated:
09 July 2025Installs:
1.4KPlugin type:
Widget
Workflow step:
Image segmentation
Image annotation
napari NanoPyx
napari-nanopyxnapari plugin of Nanoscopy Python library (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
- Ricardo Henriques
- Bruno Saraiva
- Inês Cunha
- António Brito
First released:
10 May 2023Last updated:
09 July 2025Installs:
732Plugin type:
Widget
Napari Phasors
napari-phasorsA simple plugin to use phasor analysis
- Bruno Pannunzio
- Marcelo L. Zoccoler
- Bruno Schuty
- Leonel Malacrida
First released:
22 November 2024Last updated:
08 July 2025Installs:
154Plugin type:
Reader, Sample data, Widget, Writer
Workflow step:
Image annotation
Image segmentation
Laber Manager
napari-laber-managerA plugin for management of label colormap generation and opacity control
- JH Wang
First released:
07 July 2025Last updated:
08 July 2025Installs:
88Plugin type:
Widget
napari 3D registration
napari-3D-registrationA plugin to help registering fluorescent movies in space and time
- Leo Guignard
First released:
08 July 2025Last updated:
08 July 2025Installs:
8Plugin type:
Widget
movement
movementAnalysis of body movement
First released:
02 April 2020Last updated:
08 July 2025Installs:
6KPlugin type:
Widget
ndev Sampledata
ndev-sampledataSample data for the ndev kit
- Tim Monko
First released:
05 July 2025Last updated:
07 July 2025Installs:
24Plugin type:
Sample data
3D Counter
napari-3d-counterA simple plugin for counting objects in 3D images
- Peter Newstein
First released:
18 October 2023Last updated:
07 July 2025Installs:
698Plugin type:
Widget
molSEEQ
napari-molseeqA Napari plugin for extracting single molecule sequences from single/multi-channel SMLM microscopy data.
- Piers Turner
First released:
25 July 2024Last updated:
06 July 2025Installs:
101Plugin type:
Widget
Workflow step:
Image annotation
Image segmentation
Bioio Reader
napari-bioio-readerA simple plugin to use the Bioio reader in napari
- Laurent Guerard
First released:
04 July 2025Last updated:
04 July 2025Installs:
14Plugin type:
Reader