zarpaint

Paint segmentations directly to on-disk/remote zarr arrays

  • Abigail S McGovern

License PyPI Python Version tests codecov

Paint segmentations directly to on-disk/remote zarr arrays


This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.

Installation

You can install zarpaint via pip:

pip install zarpaint

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "zarpaint" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.4.1

Last updated:

  • 2026-03-25

First released:

  • 2021-06-17

License:

  • BSD-3-Clause

Supported data:

  • Information not submitted

Plugin type:

Open extension:

Save extension:

Python versions supported:

Operating system:

  • Information not submitted

Requirements:

  • magicgui
  • napari>=0.4.19
  • numpy
  • pyyaml
  • qtpy
  • scikit-image>=0.21
  • scipy
  • toolz
  • zarr>=2.11
  • coverage; extra == "testing"
  • napari[pyqt5]; extra == "testing"
  • pytest; extra == "testing"
  • pytest-cov; extra == "testing"
  • pytest-qt; extra == "testing"
  • tensorstore; extra == "all"
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