skan

Skeleton analysis in Python

  • Juan Nunez-Iglesias

Python module to analyse skeleton (thin object) images

Binder Coverage Status

See the documentation at https://skeleton-analysis.org.

Version:

  • 0.13.0

Last updated:

  • 2025-07-17

First released:

  • 2023-01-31

License:

  • BSD 3-Clause

Supported data:

  • Information not submitted

Plugin type:

Open extension:

Save extension:

Python versions supported:

Operating system:

  • Information not submitted

Requirements:

  • imageio>=2.10.1
  • magicgui>=0.7.3
  • matplotlib>=3.4
  • networkx>=2.7
  • numba>=0.58
  • numpy>=1.25
  • pandas>=2.0.2
  • openpyxl>=2.6
  • scikit-image>=0.17.1
  • scipy>=1.7
  • toolz>=0.10.0
  • tqdm>=4.57.0
  • scikit-image[data]; extra == "all"
  • coverage; extra == "testing"
  • hypothesis; extra == "testing"
  • napari[pyqt5]>=0.4.19rc1; extra == "testing"
  • pytest; extra == "testing"
  • pytest-cov; extra == "testing"
  • pytest-qt; extra == "testing"
  • seaborn<1.0; extra == "testing"
  • tifffile; extra == "testing"
  • napari[all]>=0.4.19rc1; extra == "docs"
  • sphinx; extra == "docs"
  • jupyter; extra == "docs"
  • notebook; extra == "docs"
  • seaborn<1.0,>=0.13; extra == "docs"
  • sphinx-toggleprompt; extra == "docs"
  • sphinx-copybutton; extra == "docs"
  • sphinxcontrib-bibtex; extra == "docs"
  • myst-nb; extra == "docs"
  • zarr; extra == "docs"
  • pydata-sphinx-theme<1.0; extra == "docs"
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