napari tyssue
A napari plugin for use with the tyssue library
A napari plugin for use with the tyssue library
Example video of apoptosis demo simulation created based on the apoptosis demo from tyssue-demo.
Example video of apoptosis demo simulation created based on work under revision by Suzanne group at U Toulouse entitled "Epithelio-mesenchymal transition generates an apico-basal driving force required for tissue remodeling" available here.
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Installation
You are better off using conda. You will need pytables, and ideally CGAL.
You can install napari-tyssue via pip:
pip install napari-tyssue
To install latest development version :
pip install git+https://github.com/kephale/napari-tyssue.git
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the BSD-3 license, "napari-tyssue" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
Version:
- 0.1.3
Last updated:
- 2026-06-07
First released:
- 2022-10-20
License:
- BSD-3-Clause
Operating system:
- Information not submitted
Requirements:
- numpy
- magicgui
- qtpy
- tyssue
- quantities
- pooch
- tables
- imageio-ffmpeg
- invagination==0.0.2
- tox; extra == "testing"
- pytest; extra == "testing"
- pytest-cov; extra == "testing"
- pytest-qt; extra == "testing"
- napari; extra == "testing"
- pyqt5; extra == "testing"
- matplotlib; extra == "testing"