napari-tracks-reader

Read tracks from txt (xml, csv) files to napari

  • Sylvain Prigent

License PyPI Python Version tests codecov

Read tracks from various tracking softwares output files to napari tracks layer. Supported formats are:

  • Trakmate model (xml)
  • Icy (xml)
  • TrackContestISBI2012 (xml)

This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.

Installation

You can install napari-tracks-reader via pip:

pip install napari-tracks-reader

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the GNU GPL v3.0 license, "napari-tracks-reader" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.1.3

Last updated:

  • 2021-05-26

First released:

  • 2021-05-11

License:

  • GNU GPL v3.0

Supported data:

  • Information not submitted

Plugin type:

Open extension:

Save extension:

Python versions supported:

Operating system:

  • Information not submitted

Requirements:

  • napari-plugin-engine (>=0.1.4)
  • numpy
  • pandas (>=1.2.4)
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