The napari hub is transitioning to a community-run implementation due to launch in June 2025.
Since October 1, 2024, this version is no longer actively maintained and will not be updated. New plugins and plugin updates will continue to be listed.

napari-subboxer

napari-subboxer

A napari plugin for interacting with electron cryotomograms

License PyPI Python Version tests codecov

A napari plugin for visualising and interacting with electron cryotomograms.

Installation

You can install napari-subboxer via pip:

pip install napari-subboxer

Usage

This plugin provides a user interface for opening electron cryotomograms in napari as both volumes and slices through volumes.

demo

The plugin can be opened from the plugins menu in napari, or with napari-subboxer at the command line.

plugins-menu

Usage: napari-subboxer [TOMOGRAM_FILE]

  An interactive tool for defining and applying relative transforms
  on sets of particles in napari.

Arguments:
  [TOMOGRAM_FILE]

Options:
  --help                          Show this message and exit.

Contributing

Contributions are very welcome.

License

Distributed under the terms of the BSD-3 license, "napari-subboxer" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.0.1

Last updated:

  • 22 November 2021

First released:

  • 22 November 2021

License:

Supported data:

  • Information not submitted

Plugin type:

GitHub activity:

  • Stars: 3
  • Forks: 2
  • Issues + PRs: 0

Python versions supported:

Operating system:

Requirements:

  • napari-plugin-engine (>=0.1.4)
  • numpy
  • napari[pyqt5] (==0.4.12)
  • mrcfile
  • typer
  • eulerangles
  • starfile
  • einops
  • pydantic