Piscis

Unofficial plugin for Piscis, a deep learning algorithm for spot detection.

  • Michael Blodgett

License MIT PyPI Python Version tests codecov napari hub npe2

Unofficial napari plugin for Piscis, a deep learning algorithm for spot detection.

Installation

You can install napari-piscis via pip:

pip install napari-piscis

Or within the napari GUI via the Plugin Manager.

To install latest development version:

pip install git+https://github.com/p5ithurism/napari-piscis.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

Issues

If you encounter any problems, please file an issue along with a detailed description.

License

Distributed under the terms of the MIT license, "napari-piscis" is free and open source software

Version:

  • 0.1.22

Last updated:

  • 2026-01-20

First released:

  • 2025-11-29

License:

  • MIT

Supported data:

  • Information not submitted

Plugin type:

Open extension:

Save extension:

Python versions supported:

    Operating system:

    • Information not submitted

    Requirements:

    • napari>=0.4.19
    • magicgui>=0.8
    • numpy
    • scikit-image
    • piscis>=0.2.7
    • jax<=0.4.30
    • loguru
    • napari[all]; extra == "all"
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