BaSiCPy Shadow Correction
BaSiCPy illumination correction for napari
BaSiCPy illumination correction for napari
Example:
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Installation
You can install napari-basicpy via pip:
pip install napari-basicpy
Compatibility
napari-basicpy (>=1.0.0) requires BaSiCPy ≥ 2.0.
If you need compatibility with BaSiCPy < 2.0, please use an earlier plugin version:
To install latest development version :
pip install git+https://github.com/peng-lab/napari-basicpy.git
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the BSD-3 license, "napari-basicpy" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
Version:
- 1.0.0
Last updated:
- 2026-03-20
First released:
- 2024-05-06
License:
- BSD-3-Clause
Supported data:
- Information not submitted
Plugin type:
Open extension:
Save extension:
Operating system:
- Information not submitted
Requirements:
- numpy
- qtpy
- aicsimageio
- basicpy >=2.0.0
- matplotlib
- black ; extra == 'dev'
- flake8 ; extra == 'dev'
- flake8-black ; extra == 'dev'
- flake8-docstrings ; extra == 'dev'
- flake8-isort ; extra == 'dev'
- isort ; extra == 'dev'
- mypy ; extra == 'dev'
- pre-commit ; extra == 'dev'
- pydocstyle ; extra == 'dev'
- pytest ; extra == 'dev'
- pytest-qt ; extra == 'dev'
- tox ; extra == 'testing'
- pytest ; extra == 'testing'
- pytest-cov ; extra == 'testing'
- pytest-qt ; extra == 'testing'
- napari ; extra == 'testing'
- tox ; extra == 'tox-testing'
- pytest ; extra == 'tox-testing'
- pytest-cov ; extra == 'tox-testing'
- pytest-qt ; extra == 'tox-testing'
- napari ; extra == 'tox-testing'
- pyqt5 ; extra == 'tox-testing'