MouseCHD

Tool for heart segmentation and congenital heart defect detection in mice.

Installation¶

From Bundle¶

(1) Install Napari by following this instruction https://napari.org/stable/tutorials/fundamentals/installation.html#install-as-a-bundled-app

(2) Install mousechd-napari plugin: * Run Napari * Plugins --> Install/Uninstall Plugins ... --> Search for mousechd-napari --> Click on install.

(3) Restart Napari to run the plugin

From code¶

conda create -n mousechd_napari python=3.9
conda activate mousechd_napari
pip install "napari[all]"
pip install mousechd-napari
napari

How to use¶

Please find details instruction in folder docs