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A simple plugin to perform fspi analysis within napari

  • Olivier Cahn

License GNU GPL v3.0 PyPI Python Version tests codecov napari hub npe2 Copier

A simple plugin to analyse fluorescent sediment profile images (FSPI) within napari.

Here is a tutorial on installing, and using, the plugin from within the napari standalone application.


This napari plugin was generated with copier using the napari-plugin-template.

Installation

You can install fspi_analysis via pip:

pip install fspi_analysis

To install latest development version :

pip install git+https://github.com/engpol/fspi_analysis.git

Alternatively, install directly from within napari by searching for fspi_analysis in the 'Plugins' Tab.

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the GNU GPL v3.0 license, "fspi_analysis" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.1.2

Last updated:

  • 2025-07-17

First released:

  • 2025-05-18

License:

  • GNU GENERAL PUBLIC LICENSE ...

Supported data:

  • Information not submitted

Plugin type:

Open extension:

Save extension:

Python versions supported:

Operating system:

  • Information not submitted

Requirements:

  • numpy
  • magicgui
  • qtpy
  • scikit-image
  • pandas
  • napari
  • tox; extra == "testing"
  • pytest; extra == "testing"
  • pytest-cov; extra == "testing"
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