Ellipse Nuclei Segmentation

A plugin to navigate a .nd2 file (confocal movie) and annotate nuclei using ellipses.

  • Ruben Moreno-Aguado

License MIT PyPI Python Version tests codecov napari hub npe2 Copier

A plugin to navigate a .nd2 file (confocal movie) and annotate nuclei using ellipses.


This napari plugin was generated with copier using the napari-plugin-template (None).

Installation

You can install ellipse-nuclei-segmentation via pip:

pip install ellipse-nuclei-segmentation

If napari is not already installed, you can install ellipse-nuclei-segmentation with napari and Qt via:

pip install "ellipse-nuclei-segmentation[all]"

To install latest development version:

pip install git+https://github.com/rmaguado/ellipse-nuclei-segmentation.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "ellipse-nuclei-segmentation" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Version:

  • 0.1.4

Last updated:

  • 2026-04-16

First released:

  • 2026-04-13

License:

  • MIT

Supported data:

  • Information not submitted

Plugin type:

Open extension:

Save extension:

Python versions supported:

Operating system:

  • Information not submitted

Requirements:

  • numpy
  • nd2
  • einops
  • magicgui
  • qtpy
  • scikit-image
  • napari[all]; extra == "all"
Website by the napari team, original design by CZI. Go to napari main website.